Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014350.1 Corchorus capsularis cultivar CVL-1 contig14371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11389

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
957--1304
43
7.8
43
74
13
224
56
6
18
18
1.63
951--1300
22
15.6
22
73
14
222
56
7
18
18
1.64
1018--1082
25
2.4
27
82
10
80
63
1
18
16
1.40
1181--1234
15
3.7
15
73
9
58
57
5
20
16
1.59
2830--2929
28
3.7
27
75
11
98
21
12
24
43
1.86
3013--3081
33
2.1
33
91
0
111
17
17
10
55
1.69
7356--7679
22
15.0
22
70
17
134
55
6
20
18
1.64
7362--7659
43
6.9
45
71
15
143
55
6
20
18
1.64
7307--7678
21
17.5
20
73
12
210
54
6
20
19
1.66
7630--7671
15
2.8
15
75
10
50
59
2
19
19
1.49
7664--7982
55
5.8
55
92
0
489
49
7
17
25
1.73
7664--7982
163
1.9
164
91
2
516
49
7
17
25
1.73
7841--7927
26
3.2
26
65
25
72
49
8
18
24
1.74
8261--8380
21
5.8
21
72
14
97
51
4
21
22
1.65
8332--8365
17
2.0
17
94
0
59
55
5
14
23
1.61
8383--8510
21
6.0
21
81
3
132
55
7
21
15
1.64
8385--8510
43
2.9
44
77
6
134
56
7
21
15
1.63
9978--10006
13
2.1
14
93
6
51
48
10
20
20
1.79

Tables:   1

The End!