Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014351.1 Corchorus capsularis cultivar CVL-1 contig14372, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4444
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28


Found at i:2945 original size:20 final size:20

Alignment explanation


    Indices: 2922--2963  Score: 66
    Period size: 20  Copynumber: 2.1  Consensus size: 20

       2912 ATAAGTACAA

                          *     
       2922 GACATTTGATTTACGAATTG
          1 GACATTTGATTTACAAATTG

                        *       
       2942 GACATTTGATTTGCAAATTG
          1 GACATTTGATTTACAAATTG

              
       2962 GA
          1 GA

       2964 GCTCTTTTCA


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  20   20  1.00

ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38


Consensus pattern (20 bp):   
GACATTTGATTTACAAATTG
Done.