Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014352.1 Corchorus capsularis cultivar CVL-1 contig14373, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39661

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
364--408
14
3.2
14
87
6
56
53
4
24
17
1.62
1143--1271
66
2.0
65
95
1
231
39
18
26
15
1.90
1070--1370
165
1.8
165
88
1
460
36
17
25
20
1.94
1217--1411
100
2.0
99
82
5
241
35
17
26
20
1.94
11459--11536
27
2.9
28
84
5
106
20
15
3
60
1.51
11557--11648
36
2.6
35
87
1
139
19
18
4
57
1.57
11602--11820
14
15.1
14
66
20
60
21
20
4
53
1.63
11636--11736
30
3.4
30
69
13
100
25
19
5
48
1.71
11599--11766
59
2.8
59
90
3
259
22
20
5
51
1.69
11666--11765
29
3.4
29
69
13
96
23
21
5
51
1.67
11755--11820
7
9.3
7
79
9
62
16
21
1
60
1.43
11714--11816
36
2.9
36
85
2
129
20
21
2
55
1.56
12557--12625
20
3.5
20
71
13
63
53
23
8
14
1.68
15051--15099
24
2.1
24
85
11
66
48
28
14
8
1.72
22834--22917
42
2.0
40
88
8
125
41
0
5
52
1.26
22900--22924
8
3.1
8
100
0
50
52
0
12
36
1.39
22957--22999
2
22.0
2
90
4
70
51
2
0
46
1.13
24861--24934
33
2.2
33
90
0
112
43
20
10
25
1.84
24871--24941
33
2.2
33
94
0
124
39
16
9
33
1.82
36404--36438
3
11.7
3
100
0
70
68
0
0
31
0.90
37035--37098
9
7.3
9
79
13
55
73
0
17
9
1.08
37027--37086
16
3.8
15
79
14
59
71
0
16
11
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37035--37087
17
3.2
15
76
21
52
71
0
16
11
1.13
37074--37108
8
4.4
8
86
13
54
85
0
14
0
0.59
37076--37117
17
2.4
18
84
15
61
83
0
16
0
0.65
37078--37116
14
2.7
15
84
8
53
84
0
15
0
0.62
37074--37116
18
2.3
18
92
4
68
83
0
16
0
0.64
37123--37226
45
2.3
45
93
1
174
36
7
19
36
1.80
37586--37639
25
2.1
26
82
3
65
64
1
22
11
1.35
37951--38000
6
8.3
6
82
12
59
82
0
18
0
0.68
37958--38009
9
5.8
9
86
6
70
78
0
19
1
0.84
37945--38009
25
2.5
26
87
12
98
78
0
18
3
0.88
37944--38012
17
4.0
17
82
12
79
76
0
20
2
0.91
38804--39317
70
7.4
70
87
3
684
25
28
18
27
1.98
38804--39317
206
2.5
209
87
2
730
25
28
18
27
1.98

Tables:   1

The End!