Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014353.1 Corchorus capsularis cultivar CVL-1 contig14374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90485

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5201--5283
43
1.9
43
97
0
157
18
18
18
45
1.85
5850--5922
31
2.3
32
81
6
87
8
23
32
35
1.84
5865--5934
16
4.4
16
77
8
63
7
21
35
35
1.81
6159--6240
42
2.0
42
95
0
146
36
4
19
39
1.73
6768--6859
32
2.9
32
91
0
148
8
21
39
30
1.84
6751--6852
48
2.1
48
80
7
127
10
23
36
29
1.89
6767--6859
16
5.8
15
76
12
87
8
22
38
30
1.84
12749--12796
22
2.2
22
82
14
55
14
16
45
22
1.84
14302--14326
11
2.3
11
100
0
50
40
20
8
32
1.81
14631--14702
33
2.2
33
87
0
99
44
19
6
29
1.77
17194--17241
22
2.2
22
82
14
55
14
16
45
22
1.84
21540--21586
2
23.5
2
100
0
94
0
0
48
51
1.00
22109--22151
11
3.9
11
78
0
50
41
9
6
41
1.64
22106--22148
22
2.0
22
90
0
68
39
9
6
44
1.64
23504--23588
19
4.4
19
70
16
75
27
1
17
54
1.51
23552--23597
9
4.7
10
84
10
60
23
2
19
54
1.55
23513--23597
19
4.4
19
70
21
68
24
1
18
55
1.50
24503--24545
2
21.5
2
86
9
61
46
0
2
51
1.13
24611--24668
29
2.0
28
83
9
73
51
18
1
27
1.56
31170--31212
22
2.0
21
86
4
59
46
27
11
13
1.78
32710--32967
132
2.0
130
86
2
365
47
3
12
37
1.56
33852--33904
27
2.0
27
82
7
65
39
11
1
47
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35595--35621
2
13.5
2
100
0
54
48
0
0
51
1.00
37946--37991
23
2.0
22
88
12
67
50
0
6
43
1.28
39607--39660
21
2.6
21
100
0
108
31
20
18
29
1.96
39768--39830
30
2.1
30
87
0
90
20
31
15
31
1.94
41805--41895
16
5.6
17
75
11
93
14
10
38
36
1.81
41828--41888
15
3.9
15
75
10
59
18
8
36
37
1.80
41819--41895
32
2.4
32
97
0
145
14
10
37
37
1.80
42043--42138
16
6.0
16
79
4
68
7
11
30
51
1.65
42055--42132
32
2.4
32
93
0
129
5
10
32
52
1.57
42191--42220
15
1.9
16
93
6
53
0
13
40
46
1.43
42659--42719
25
2.4
25
100
0
122
21
8
11
59
1.58
43344--43505
56
2.9
57
70
22
164
22
6
11
59
1.53
45307--45373
29
2.3
29
84
5
82
31
14
19
34
1.92
45315--45464
74
2.0
74
97
0
282
32
12
21
33
1.91
55254--55285
14
2.3
14
94
0
55
50
21
12
15
1.77
55720--55757
11
3.5
11
89
10
51
39
0
2
57
1.12
55859--56013
70
2.2
70
89
2
231
36
12
0
50
1.45
56113--56156
23
1.9
23
85
0
61
38
6
4
50
1.50
63112--63155
19
2.2
21
88
8
65
45
0
0
54
0.99
73123--73160
15
2.4
16
91
4
60
18
13
28
39
1.88
73388--73445
29
2.0
29
89
0
89
27
15
17
39
1.90
76164--76197
11
3.2
10
84
15
50
50
17
2
29
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
78804--78846
11
3.9
11
90
0
68
46
6
4
41
1.51
78800--78846
22
2.1
22
96
0
85
46
6
4
42
1.48
79811--79843
12
2.8
12
90
4
50
39
9
6
45
1.61
79938--80080
72
2.0
72
95
2
259
21
29
8
40
1.83
83372--83402
5
6.0
5
92
7
53
38
0
0
61
0.96
83582--83622
3
14.0
3
89
5
66
31
2
0
65
1.05
88500--88539
20
2.0
20
85
0
53
17
12
7
62
1.52

Tables:   1

The End!