Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014354.1 Corchorus capsularis cultivar CVL-1 contig14375, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7468
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3952 original size:24 final size:24

Alignment explanation


    Indices: 3920--3968  Score: 80
    Period size: 24  Copynumber: 2.0  Consensus size: 24

       3910 CAATGGAACA

                       **           
       3920 TCATGACCATCCGGACCCAAACTC
          1 TCATGACCATCAAGACCCAAACTC

                                    
       3944 TCATGACCATCAAGACCCAAACTC
          1 TCATGACCATCAAGACCCAAACTC

             
       3968 T
          1 T

       3969 TTGTCCCGAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.33, C:0.39, G:0.10, T:0.18


Consensus pattern (24 bp):   
TCATGACCATCAAGACCCAAACTC

Found at i:4179 original size:2 final size:2

Alignment explanation


    Indices: 4172--4198  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       4162 TGTATAAACA

                                                    
       4172 AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT A

       4199 ATAAGGTAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Done.