Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014355.1 Corchorus capsularis cultivar CVL-1 contig14376, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59100

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13281--13316
6
6.0
6
90
0
54
19
0
11
69
1.18
15427--15495
35
2.0
34
86
5
95
28
13
7
50
1.67
15529--15591
31
2.0
31
82
11
76
31
9
3
55
1.48
19207--19236
12
2.5
12
94
0
51
36
6
3
53
1.44
19515--19549
17
2.1
17
88
0
52
42
8
5
42
1.59
26628--26839
104
2.0
103
98
0
406
49
19
17
13
1.80
31964--32042
18
4.4
18
85
0
95
24
46
22
6
1.75
31964--32064
36
2.8
36
81
0
103
24
45
21
7
1.78
32034--32072
18
2.2
18
90
0
60
25
48
15
10
1.76
33266--33301
15
2.4
15
90
0
54
33
27
30
8
1.86
38562--38608
17
2.8
17
86
0
67
31
19
29
19
1.96
38920--39312
156
2.5
154
75
11
365
33
21
14
30
1.93
41035--41069
2
18.0
2
94
5
63
51
0
0
48
1.00
42828--42883
24
2.3
24
96
0
103
41
26
10
21
1.86
47031--47056
6
4.3
6
100
0
52
15
0
0
84
0.62
58365--58430
22
3.0
22
95
0
123
13
25
37
22
1.91
58617--58703
44
2.0
43
84
6
113
26
17
27
28
1.97

Tables:   1

The End!