genome.fa.s14357.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014357.1 Corchorus capsularis cultivar CVL-1 contig14378, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110403

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3150--3291	75	1.9	75	89	0	221	29	14	19	36	1.91
4173--4326	75	2.1	75	91	0	245	34	15	14	35	1.88
5136--5450	75	4.2	74	82	5	368	35	15	15	33	1.89
5148--5450	148	2.0	151	85	4	418	35	15	15	33	1.89
7534--7584	16	3.2	16	75	5	50	43	17	9	29	1.81
8192--8269	41	1.9	40	84	7	104	25	11	24	38	1.89
8634--8668	16	2.2	16	100	0	70	11	25	17	45	1.81
9364--9406	11	3.9	11	90	0	68	46	6	4	41	1.51
9360--9406	22	2.1	22	96	0	85	46	6	4	42	1.48
10274--10366	31	3.0	31	88	0	132	48	13	4	33	1.63
10283--10367	16	5.4	16	73	5	84	50	15	5	28	1.67
10735--10945	83	2.5	83	93	0	350	44	11	15	27	1.82
10924--11008	16	5.4	16	78	5	102	48	15	7	29	1.71
10934--10988	15	3.6	15	85	4	83	49	16	1	32	1.56
10924--11007	31	2.7	31	96	0	150	48	15	5	29	1.68
11678--12127	235	1.9	236	91	1	742	41	15	16	26	1.88
32949--32992	19	2.2	20	88	4	63	59	13	0	27	1.35
33352--33397	8	5.1	9	82	15	51	2	21	0	76	0.90
36136--36196	28	2.2	28	88	2	88	49	21	9	19	1.77
47541--47569	12	2.3	13	94	5	51	72	10	0	17	1.11
49041--49151	54	2.1	54	88	6	163	36	15	28	19	1.93
53617--53698	31	2.6	31	86	3	112	28	24	8	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63529--63620	30	3.0	30	93	6	166	13	38	22	26	1.91
64482--64548	33	2.0	33	100	0	134	41	16	20	20	1.90
73233--73289	3	19.0	3	100	0	114	66	0	33	0	0.92
74684--74861	86	2.1	85	80	4	196	48	23	5	23	1.70
75629--75700	29	2.4	30	79	9	76	27	31	15	25	1.95
78278--78327	16	3.2	15	80	8	55	28	4	8	60	1.43
78930--78961	16	2.0	16	100	0	64	50	18	18	12	1.78
79255--79441	99	1.8	98	82	8	232	38	25	10	25	1.88
79424--79449	5	5.2	5	100	0	52	61	19	0	19	1.35
81006--81040	6	5.7	6	93	6	61	82	0	17	0	0.66
80997--81040	13	3.3	13	81	12	54	81	0	18	0	0.68
80998--81040	19	2.2	20	91	4	70	81	0	18	0	0.69
85836--85869	16	2.1	16	100	0	68	47	17	23	11	1.81
86150--86336	99	1.8	98	82	10	234	39	24	10	25	1.87
86319--86344	5	5.2	5	100	0	52	61	19	0	19	1.35
88139--88172	12	2.8	12	86	0	50	41	0	5	52	1.25
88246--88297	7	7.4	7	79	16	54	65	0	5	28	1.16
88606--88784	85	2.1	85	96	0	331	18	9	22	49	1.76
88778--88907	53	2.5	52	92	2	208	18	14	14	52	1.75
91151--91208	30	1.9	30	93	6	100	41	27	10	20	1.85
94233--94319	45	1.9	45	97	0	165	27	16	35	20	1.94
105238--105264	13	2.1	13	100	0	54	29	0	62	7	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105309--105351	17	2.5	17	92	3	68	25	13	37	23	1.92
105705--106005	156	1.9	155	78	9	326	33	19	17	29	1.94
107373--107410	11	3.5	11	85	10	51	57	2	0	39	1.12
109588--109639	20	2.6	20	78	9	61	55	1	1	40	1.22

Tables:   1

The End!