genome.fa.s14358.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014358.1 Corchorus capsularis cultivar CVL-1 contig14379, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55002

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290--372	29	2.7	29	78	10	78	42	10	10	36	1.75
582--610	2	14.5	2	100	0	58	51	0	0	48	1.00
848--887	3	13.3	3	100	0	80	65	0	0	35	0.93
1192--1250	30	2.0	30	90	6	93	49	5	20	25	1.69
1722--1765	22	2.0	22	100	0	88	13	27	18	40	1.88
2888--2913	7	3.7	7	100	0	52	42	30	11	15	1.82
5495--5648	33	4.7	33	88	0	202	14	40	31	13	1.84
5772--5834	33	1.9	33	83	6	83	14	39	28	17	1.89
7157--7271	57	2.0	57	93	0	194	32	10	17	40	1.83
11081--11125	21	2.1	21	100	0	90	17	46	8	26	1.78
16347--16396	23	2.2	23	100	0	100	36	12	18	34	1.87
18303--18384	27	3.0	27	94	0	137	40	26	18	14	1.89
21229--21264	15	2.4	15	90	9	56	0	11	30	58	1.33
24747--24775	14	2.1	14	100	0	58	31	0	27	41	1.56
28021--28054	3	11.3	3	100	0	68	67	0	32	0	0.91
33298--33338	1	41.0	1	95	0	73	0	2	0	97	0.17
36263--36305	21	2.0	21	82	8	52	23	11	16	48	1.78
36769--36854	42	2.0	42	100	0	172	32	22	19	25	1.97
42647--42681	11	3.2	11	87	0	52	77	0	22	0	0.78
42647--42684	17	2.2	17	90	9	60	76	0	23	0	0.79
43449--43754	35	8.6	34	79	7	256	39	9	18	33	1.82
43484--43754	108	2.5	105	78	8	296	39	8	18	33	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43484--43750	143	1.9	141	85	3	374	39	8	17	33	1.81
50417--50604	33	5.7	32	68	21	129	50	4	15	29	1.65
50380--50641	70	3.9	70	89	8	423	48	5	16	29	1.69
50380--50641	132	1.9	137	90	6	417	48	5	16	29	1.69
50582--50763	40	4.6	39	73	14	135	46	7	19	26	1.75
50430--50688	132	1.9	129	86	8	349	49	5	17	28	1.68
50569--50788	80	2.8	78	82	5	239	48	6	19	25	1.72
50997--51059	21	3.0	21	69	2	54	57	3	28	11	1.49
50983--51086	35	2.9	35	81	8	129	56	3	25	14	1.55
51104--51153	21	2.3	22	82	6	66	58	0	24	18	1.40
51121--51221	7	14.7	7	68	15	59	56	1	25	15	1.50
51104--51229	35	3.6	35	85	9	161	55	2	23	18	1.54
51246--51409	22	7.6	21	78	11	145	55	4	18	21	1.59
51266--51481	43	5.2	42	82	13	218	54	5	18	22	1.62
51361--51439	35	2.2	37	93	6	144	51	5	21	21	1.66
51417--51489	21	3.4	21	81	5	92	54	4	19	21	1.60
51284--51501	44	5.2	41	83	11	223	53	5	19	22	1.64
51567--51595	11	2.6	11	100	0	58	62	0	27	10	1.28

Tables:   1

The End!