Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014359.1 Corchorus capsularis cultivar CVL-1 contig14380, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11288
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:4102 original size:21 final size:21

Alignment explanation


    Indices: 4078--4117  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       4068 ATAGCCTACC

                 *               
       4078 TGGGTGATCAGACAAACCACA
          1 TGGGTCATCAGACAAACCACA

                  *  *         
       4099 TGGGTCCTCGGACAAACCA
          1 TGGGTCATCAGACAAACCA

       4118 TGTGGGCACC


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.33, C:0.28, G:0.25, T:0.15


Consensus pattern (21 bp):   
TGGGTCATCAGACAAACCACA

Found at i:10605 original size:2 final size:2

Alignment explanation


    Indices: 10556--10589  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

      10546 TGTGTGTGTG

                                                              
      10556 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

      10590 ATGGAAACAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Done.