Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014374.1 Corchorus capsularis cultivar CVL-1 contig14395, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 910

Length: 1517
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:1324 original size:26 final size:26

Alignment explanation


    Indices: 1272--1324  Score: 61
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1262 TGAAGCCTAC

                                ***   
       1272 CTTAAATTATTTTTGAAAATTGTTTT
          1 CTTAAATTATTTTTGAAAATAACTTT

                           *  *       
       1298 CTTAAATTATTTTTGGAACTAACTTT
          1 CTTAAATTATTTTTGAAAATAACTTT

             
       1324 C
          1 C

       1325 ATATGTAGCA


Statistics
Matches: 22,  Mismatches: 5, Indels: 0
        0.81            0.19        0.00

Matches are distributed among these distances:
  26   22  1.00

ACGTcount: A:0.30, C:0.09, G:0.08, T:0.53


Consensus pattern (26 bp):   
CTTAAATTATTTTTGAAAATAACTTT
Done.