genome.fa.s14375.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014375.1 Corchorus capsularis cultivar CVL-1 contig14396, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37861

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12202--12249	20	2.4	20	78	0	51	31	2	14	52	1.54
13563--13591	15	2.0	15	93	6	51	34	3	13	48	1.60
13890--13926	18	2.0	18	89	5	56	45	2	21	29	1.65
17542--17723	36	5.3	35	82	11	173	29	21	8	39	1.84
17634--17774	32	4.2	32	85	9	169	29	24	9	37	1.86
17714--17772	18	3.2	18	66	4	55	25	25	8	40	1.83
17707--17797	37	2.5	37	98	1	175	24	27	8	39	1.84
17815--17917	36	2.9	35	82	8	102	24	12	14	48	1.78
19073--19114	23	1.9	21	85	9	57	21	14	9	54	1.68
20000--20045	9	4.7	10	74	15	51	23	0	0	76	0.79
19990--20063	28	2.6	28	93	4	121	25	0	0	74	0.82
19999--20064	17	4.2	16	72	20	59	25	0	0	74	0.82
19991--20066	10	7.8	10	75	14	61	28	0	0	71	0.87
26096--26133	14	2.7	14	91	0	58	44	7	23	23	1.79
26119--26224	36	2.9	36	78	10	117	43	7	17	31	1.77
26173--26214	14	2.8	15	82	10	50	38	2	23	35	1.68
26180--26286	22	5.0	22	83	8	130	45	3	20	29	1.68
26201--26285	8	12.0	7	73	21	63	49	2	18	29	1.60
26209--26285	14	5.5	13	76	21	68	49	2	19	28	1.62
26209--26285	6	11.2	6	75	20	55	49	2	19	28	1.62
26376--26643	8	36.8	8	65	20	67	43	3	23	29	1.71
26359--26414	24	2.3	24	90	0	85	42	3	23	30	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26436--26598	22	7.2	22	74	12	116	42	4	23	29	1.75
26421--26648	14	15.5	14	66	20	92	42	3	23	29	1.72
26485--26635	36	4.2	36	71	16	114	42	2	24	30	1.68
26836--26966	69	1.9	70	91	1	219	29	15	28	27	1.96
27561--27593	16	2.0	17	88	5	50	0	15	3	81	0.80
27849--27891	23	1.9	23	90	4	70	2	13	0	83	0.74
27854--27908	26	2.1	26	82	0	65	3	18	5	72	1.18
28330--28376	12	3.9	12	94	0	85	27	6	14	51	1.67
28687--28725	15	2.6	16	80	12	55	35	17	10	35	1.84
28782--28874	48	1.9	50	85	8	131	8	18	9	63	1.50
28782--28880	46	2.1	46	83	10	121	8	18	9	64	1.46
36561--36603	12	3.5	12	93	6	77	34	16	23	25	1.95
37616--37651	10	3.6	10	92	0	63	30	5	22	41	1.76
37613--37651	20	2.0	20	100	0	78	30	5	20	43	1.73
37762--37800	12	3.6	12	74	25	50	35	15	23	25	1.94

Tables:   1

The End!