Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014376.1 Corchorus capsularis cultivar CVL-1 contig14397, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 8865
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.32
Found at i:701 original size:35 final size:34
Alignment explanation
Indices: 655--792 Score: 233
Period size: 35 Copynumber: 4.0 Consensus size: 34
645 TTCTTACTAA
655 ACTTAATTACCCTGAATTAAGTTACTTATTGAACT
1 ACTTAATTACCCTGAATTAAGTTACTTATT-AACT
690 ACTTAATTACCCTGAATTAAGTTACTTATTAACT
1 ACTTAATTACCCTGAATTAAGTTACTTATTAACT
724 CACTTAATTACCCTGAATTAAGTTACTTATTGAACT
1 -ACTTAATTACCCTGAATTAAGTTACTTATT-AACT
*
760 ACTTAATTA-CCTGATTTAAGTTACTTATTAACT
1 ACTTAATTACCCTGAATTAAGTTACTTATTAACT
793 CACTGATTAT
Statistics
Matches: 100, Mismatches: 1, Indels: 6
0.93 0.01 0.06
Matches are distributed among these distances:
33 4 0.04
34 23 0.23
35 69 0.69
36 4 0.04
ACGTcount: A:0.34, C:0.17, G:0.07, T:0.41
Consensus pattern (34 bp):
ACTTAATTACCCTGAATTAAGTTACTTATTAACT
Found at i:768 original size:70 final size:69
Alignment explanation
Indices: 655--796 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 69
645 TTCTTACTAA
655 ACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTACCCTGAATTAAGTTACTTATT
1 ACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTA-CCTGAATTAAGTTACTTATT
720 AACTC
65 AACTC
*
725 ACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTACCTGATTTAAGTTACTTATTA
1 ACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTACCTGAATTAAGTTACTTATTA
790 ACTC
66 ACTC
794 ACT
1 ACT
797 GATTATCTTT
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 27 0.38
70 44 0.62
ACGTcount: A:0.34, C:0.18, G:0.07, T:0.41
Consensus pattern (69 bp):
ACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTACCTGAATTAAGTTACTTATTA
ACTC
Found at i:907 original size:35 final size:35
Alignment explanation
Indices: 868--1085 Score: 219
Period size: 35 Copynumber: 6.1 Consensus size: 35
858 CTAATCTCTG
868 CTTATTAACTCACTTAATTACCCTGAATTAAGTTA
1 CTTATTAACTCACTTAATTACCCTGAATTAAGTTA
*
903 CTTATTGAACT-ACTTAATTA-CCTGATTTAAGTTA
1 CTTATT-AACTCACTTAATTACCCTGAATTAAGTTA
937 CTTATTAACTCACTTAATTACCCTGAATTAAAGTTGA
1 CTTATTAACTCACTTAATTACCCTGAATT-AAGTT-A
* * *
974 -TTACTGACTCACTTAATTACCCTGAATTAAGTTG
1 CTTATTAACTCACTTAATTACCCTGAATTAAGTTA
** * *
1008 CTTATTACTGACTTGCTTAACTACTCTGAATTAAGTTGA
1 CTTATTA---ACTCACTTAATTACCCTGAATTAAGTT-A
*** ** *
1047 -TTACCGACTTGCTTAATTATCCTGAATTAAGTTA
1 CTTATTAACTCACTTAATTACCCTGAATTAAGTTA
1081 CTTAT
1 CTTAT
1086 CACTGACTCG
Statistics
Matches: 153, Mismatches: 19, Indels: 22
0.79 0.10 0.11
Matches are distributed among these distances:
33 4 0.03
34 29 0.19
35 58 0.38
36 35 0.23
37 1 0.01
38 26 0.17
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (35 bp):
CTTATTAACTCACTTAATTACCCTGAATTAAGTTA
Found at i:990 original size:224 final size:225
Alignment explanation
Indices: 570--1014 Score: 765
Period size: 224 Copynumber: 2.0 Consensus size: 225
560 ATCAGGAGGG
570 ACTGATTATCTTTCTTTGATTCTTAACTGACCCAATCACCCTGAATTAAGCCATTTTATTTTCCC
1 ACTGATTATCTTTCTTTGATTCTTAACTGACCCAATCACCCTGAATTAAGCCATTTTATTTTCCC
*
635 TAATCTCTGCTTCTTACTAAACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTAC
66 TAATCTCTGCTTATTACTAAACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTAC
*
700 CCTGAATTAAGTTACTTATTAACTCACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTA
131 CCTGAATTAAGTTACTTATTAACTCACTTAATTACCCTGAATTAAGTTACTTACTGAACTACTTA
*
765 ATTA-CCTGATTTAAGTTACTTATTAACTC
196 ATTACCCTGAATTAAGTTACTTATTAACTC
794 ACTGATTATCTTTCTTTGATTCTTAACTGACCCAATCACCCTGAATTAAGCCATTTTATTTTCCC
1 ACTGATTATCTTTCTTTGATTCTTAACTGACCCAATCACCCTGAATTAAGCCATTTTATTTTCCC
*
859 TAATCTCTGCTTATTAACT-CACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTA
66 TAATCTCTGCTTATT-ACTAAACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTA
*
923 -CCTGATTTAAGTTACTTATTAACTCACTTAATTACCCTGAATTAAAGTTGA-TTACTG-ACTCA
130 CCCTGAATTAAGTTACTTATTAACTCACTTAATTACCCTGAATT-AAGTT-ACTTACTGAACT-A
*
985 CTTAATTACCCTGAATTAAGTTGCTTATTA
192 CTTAATTACCCTGAATTAAGTTACTTATTA
1015 CTGACTTGCT
Statistics
Matches: 210, Mismatches: 6, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
223 45 0.21
224 142 0.68
225 23 0.11
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (225 bp):
ACTGATTATCTTTCTTTGATTCTTAACTGACCCAATCACCCTGAATTAAGCCATTTTATTTTCCC
TAATCTCTGCTTATTACTAAACTTAATTACCCTGAATTAAGTTACTTATTGAACTACTTAATTAC
CCTGAATTAAGTTACTTATTAACTCACTTAATTACCCTGAATTAAGTTACTTACTGAACTACTTA
ATTACCCTGAATTAAGTTACTTATTAACTC
Found at i:1065 original size:73 final size:73
Alignment explanation
Indices: 875--1094 Score: 238
Period size: 73 Copynumber: 3.1 Consensus size: 73
865 CTGCTTATTA
* ** *
875 ACTCACTTAATTACCCTGAATT-AAGTT-ACTTATTGAACT-ACTTAATTACCTGATTTAAGTTA
1 ACTCACTTAACTACCCTGAATTAAAGTTGA-TTACCG-ACTCACTTAATTACCTGAATTAAGTTA
937 CTTATTA---
64 CTTATTACTG
* * *
944 ACTCACTTAATTACCCTGAATTAAAGTTGATTACTGACTCACTTAATTACCCTGAATTAAGTTGC
1 ACTCACTTAACTACCCTGAATTAAAGTTGATTACCGACTCACTTAATTA-CCTGAATTAAGTTAC
1009 TTATTACTG
65 TTATTACTG
** * **
1018 ACTTGCTTAACTACTCTGAATT-AAGTTGATTACCGACTTGCTTAATTATCCTGAATTAAGTTAC
1 ACTCACTTAACTACCCTGAATTAAAGTTGATTACCGACTCACTTAATTA-CCTGAATTAAGTTAC
*
1082 TTATCACTG
65 TTATTACTG
1091 ACTC
1 ACTC
1095 GTCTTTTCTT
Statistics
Matches: 130, Mismatches: 14, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
69 25 0.19
70 19 0.15
71 20 0.15
73 48 0.37
74 18 0.14
ACGTcount: A:0.31, C:0.20, G:0.10, T:0.40
Consensus pattern (73 bp):
ACTCACTTAACTACCCTGAATTAAAGTTGATTACCGACTCACTTAATTACCTGAATTAAGTTACT
TATTACTG
Found at i:1790 original size:23 final size:24
Alignment explanation
Indices: 1764--1822 Score: 59
Period size: 23 Copynumber: 2.5 Consensus size: 24
1754 ATAATAACTA
* *
1764 AAAGTCCAAATAGACATAAAAA-G
1 AAAGTCCAAATAGAAATAAAAATC
* *
1787 AAAG-CCCAATCGGAAATAAAAATC
1 AAAGTCCAAAT-AGAAATAAAAATC
1811 AAAGTCCAAATA
1 AAAGTCCAAATA
1823 ATCTTTTCCC
Statistics
Matches: 27, Mismatches: 6, Indels: 5
0.71 0.16 0.13
Matches are distributed among these distances:
22 5 0.19
23 13 0.48
24 4 0.15
25 5 0.19
ACGTcount: A:0.58, C:0.17, G:0.12, T:0.14
Consensus pattern (24 bp):
AAAGTCCAAATAGAAATAAAAATC
Found at i:5444 original size:35 final size:35
Alignment explanation
Indices: 5322--5591 Score: 175
Period size: 36 Copynumber: 7.6 Consensus size: 35
5312 TAAGATAAGT
* * * *
5322 AACTGAAGAAAGACCACCCTAGATC-ATTCCAAACTG
1 AACTGAAGAAAGACCACCCTCGGTCAATT-GAAA-TA
* * * * *
5358 AATTGAAGAACGACCACCCTCGATC-ATTCCGACACA
1 AACTGAAGAAAGACCACCCTCGGTCAATT--GAAATA
*
5394 AACTGAAGAAAGACCACCCTAGGTCAATTGAAATA
1 AACTGAAGAAAGACCACCCTCGGTCAATTGAAATA
* * * * * *
5429 AGCTGAAGAATGACCACCCTCGATCATTCTGACACA
1 AACTGAAGAAAGACCACCCTCGGTCAAT-TGAAATA
* * *
5465 AATTGGAGAAAGACCACCCTGGGTCAATTGAAATA
1 AACTGAAGAAAGACCACCCTCGGTCAATTGAAATA
* * * * * * *
5500 AACTGGAGAACGATCACCCTCGATCATTCTGACACA
1 AACTGAAGAAAGACCACCCTCGGTCAAT-TGAAATA
* * * * *
5536 AACTAAAGGAAGACCGCCCTGGGTCAACTGAAATA
1 AACTGAAGAAAGACCACCCTCGGTCAATTGAAATA
* *
5571 AGCTGAAGAACGACCACCCTC
1 AACTGAAGAAAGACCACCCTC
5592 AATCATCTTG
Statistics
Matches: 175, Mismatches: 55, Indels: 9
0.73 0.23 0.04
Matches are distributed among these distances:
35 74 0.42
36 95 0.54
37 6 0.03
ACGTcount: A:0.38, C:0.27, G:0.18, T:0.17
Consensus pattern (35 bp):
AACTGAAGAAAGACCACCCTCGGTCAATTGAAATA
Found at i:5454 original size:71 final size:71
Alignment explanation
Indices: 5322--5597 Score: 358
Period size: 71 Copynumber: 3.9 Consensus size: 71
5312 TAAGATAAGT
* * *
5322 AACTGAAGAAAGACCACCCTAGATC-ATTCCAAACTGAA-TTGAAGAACGACCACCCTCGATCAT
1 AACTGAAGAAAGACCACCCTAGGTCAATT-GAAA-T-AAGCTGAAGAACGACCACCCTCGATCAT
*
5385 TCCGACACA
63 TCTGACACA
*
5394 AACTGAAGAAAGACCACCCTAGGTCAATTGAAATAAGCTGAAGAATGACCACCCTCGATCATTCT
1 AACTGAAGAAAGACCACCCTAGGTCAATTGAAATAAGCTGAAGAACGACCACCCTCGATCATTCT
5459 GACACA
66 GACACA
* * * * * *
5465 AATTGGAGAAAGACCACCCTGGGTCAATTGAAATAAACTGGAGAACGATCACCCTCGATCATTCT
1 AACTGAAGAAAGACCACCCTAGGTCAATTGAAATAAGCTGAAGAACGACCACCCTCGATCATTCT
5530 GACACA
66 GACACA
* * * * * *
5536 AACTAAAGGAAGACCGCCCTGGGTCAACTGAAATAAGCTGAAGAACGACCACCCTCAATCAT
1 AACTGAAGAAAGACCACCCTAGGTCAATTGAAATAAGCTGAAGAACGACCACCCTCGATCAT
5598 CTTGGACTAA
Statistics
Matches: 180, Mismatches: 22, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
70 2 0.01
71 148 0.82
72 27 0.15
73 3 0.02
ACGTcount: A:0.38, C:0.27, G:0.17, T:0.17
Consensus pattern (71 bp):
AACTGAAGAAAGACCACCCTAGGTCAATTGAAATAAGCTGAAGAACGACCACCCTCGATCATTCT
GACACA
Found at i:5614 original size:71 final size:71
Alignment explanation
Indices: 5361--5638 Score: 355
Period size: 71 Copynumber: 3.9 Consensus size: 71
5351 CAAACTGAAT
* * *
5361 TGAAGAACGACCACCCTCGATCATTCCGACACAAACTGAAGAAAGACCACCCTAGGTCAATTGAA
1 TGAAGAACGACCACCCTCGATCATTCTGACACAAACTAAAGAAAGACCACCCTGGGTCAATTGAA
5426 ATAAGC
66 ATAAGC
* * **
5432 TGAAGAATGACCACCCTCGATCATTCTGACACAAATTGGAGAAAGACCACCCTGGGTCAATTGAA
1 TGAAGAACGACCACCCTCGATCATTCTGACACAAACTAAAGAAAGACCACCCTGGGTCAATTGAA
*
5497 ATAAAC
66 ATAAGC
* * * * *
5503 TGGAGAACGATCACCCTCGATCATTCTGACACAAACTAAAGGAAGACCGCCCTGGGTCAACTGAA
1 TGAAGAACGACCACCCTCGATCATTCTGACACAAACTAAAGAAAGACCACCCTGGGTCAATTGAA
5568 ATAAGC
66 ATAAGC
* * * *
5574 TGAAGAACGACCACCCTCAATCA-TCTTGGAC-TAAATTAAAGAAAAGACCACCATGGGTC-ATT
1 TGAAGAACGACCACCCTCGATCATTC-T-GACACAAACTAAAG-AAAGACCACCCTGGGTCAATT
5636 GAA
63 GAA
5639 GGAAATTGAA
Statistics
Matches: 179, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
70 2 0.01
71 160 0.89
72 17 0.09
ACGTcount: A:0.38, C:0.26, G:0.18, T:0.18
Consensus pattern (71 bp):
TGAAGAACGACCACCCTCGATCATTCTGACACAAACTAAAGAAAGACCACCCTGGGTCAATTGAA
ATAAGC
Found at i:5739 original size:35 final size:35
Alignment explanation
Indices: 5666--5763 Score: 126
Period size: 35 Copynumber: 2.8 Consensus size: 35
5656 ATAATTGGAG
* * *
5666 AATTGAAGAAAGACCACCCTGGATC-ATTGAAGTA
1 AATTGAAGAAAGATCGCCCTGGATCAATTGAAATA
** * *
5700 AATTGAAGACTGATCGCCCTGGACCAATTGAAATT
1 AATTGAAGAAAGATCGCCCTGGATCAATTGAAATA
5735 AATTGAAGAAAGATCGCCCTGGATCAATT
1 AATTGAAGAAAGATCGCCCTGGATCAATT
5764 AACTAAGGAC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
34 20 0.38
35 33 0.62
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.23
Consensus pattern (35 bp):
AATTGAAGAAAGATCGCCCTGGATCAATTGAAATA
Found at i:7484 original size:49 final size:48
Alignment explanation
Indices: 7207--7927 Score: 527
Period size: 49 Copynumber: 14.7 Consensus size: 48
7197 AGTGAACTTT
* * ** * **
7207 CCTTTCGTCCGGAAAGGGCATTTTAAGAAAAAGCGAGCAAAAACT-AATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAAC-AGGTAAAA-TAAATG
* * * * * * * **
7256 CCTTCCGTTCAGGAAGGGCGTTTTAGGAAAAAGCAAGTAAAAGTTAGGG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAAA-TAAATG
* * * * **** **
7305 CCTTCCGTTCGGGAAGGGCACTGTGGCAAAAGGTGGGTAGAAATAAGCG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTA-AAATAAATG
* * * **
7354 TCTTCCGTCCGGGAAGGGCATTTTTGGAAAAAAATAGCAAGTAAAATAAGCG
1 CCTTCCGTCCGGGAAGGGCA-TTTTGG-GAAAAA-A-CAGGTAAAATAAATG
* * *
7406 CCTTCCGTCCGAGAAGGGCATTTTGGGAAAAAACAGGTAAAGATTAGTG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAA-ATAAATG
* * * * *
7455 CCTTACGTCCGGGAAGGGCGTTTTAGG-AAAAACTGGTAACAAATCAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGT-A-AAATAAATG
* *
7504 CCTTCCGTCCGGGAAGGGCATTTTTGGAAAATAGCAGGTAAAAGTAAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAA-AACAGGTAAAA-TAAATG
* * * *
7554 CCTTCCCTCCGGGAAGGGCATTTTTGGAAAGGAGCAGGTAAAAGTAAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAA-AAACAGGTAAAA-TAAATG
* * **
7604 CCTTCCGTTCGGG-AGGGCATTTTGGGAAATAGTAGGTAAAATCAAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAAAT-AAATG
* * * * *
7652 CCTTCCATCCGGGAAGGGAATTTTGGGAAATAACAGGTAAAGATTAGTG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAA-ATAAATG
** * * * * *
7701 CCTTATGTCCGGGAAGGGCGTTTT-AG-AAAAACCGGTGACAAATCAGTG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGT-A-AAATAAATG
* * *
7749 CCTTCCGTCCGGGAAGGGCATTTTTGGAAAATAGCAGGTAAAAGTAAGTG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAA-AACAGGTAAAA-TAAATG
* * ** * *
7799 CCTTCCATCCGGGAAGGACATTTTAAGAAAAAGCGGGTAAAATCAAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAAAT-AAATG
* * * *
7848 CCTTCCATCCGGGAAGGGAATTTTGGGAAATAACGGGTAAAATCAAATG
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAAAT-AAATG
7897 CCTTCCGTCCGGGAA-GGCATTTTGGGAAAAA
1 CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAA
7928 CAAAATTTGA
Statistics
Matches: 551, Mismatches: 98, Indels: 47
0.79 0.14 0.07
Matches are distributed among these distances:
47 9 0.02
48 92 0.17
49 281 0.51
50 119 0.22
51 20 0.04
52 27 0.05
53 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (48 bp):
CCTTCCGTCCGGGAAGGGCATTTTGGGAAAAAACAGGTAAAATAAATG
Found at i:7785 original size:245 final size:245
Alignment explanation
Indices: 7405--7929 Score: 806
Period size: 245 Copynumber: 2.1 Consensus size: 245
7395 TAAAATAAGC
*
7405 GCCTTCCGTCCGAGAAGGGCATTTTGGGAAAAAACAGGTAAAGATTAGTGCCTTACGTCCGGGAA
1 GCCTTCCGTCCGGGAAGGGCATTTTGGG-AAAAACAGGTAAAGATTAGTGCCTTACGTCCGGGAA
*
7470 GGGCGTTTTAGGAAAAACTGGTAACAAATCAATGCCTTCCGTCCGGGAAGGGCATTTTTGGAAAA
65 GGGCGTTTTAGGAAAAACCGGTAACAAATCAATGCCTTCCGTCCGGGAAGGGCATTTTTGGAAAA
* * ** *
7535 TAGCAGGTAAAAGTAAATGCCTTCCCTCCGGGAAGGGCATTTTTGGAAAGGAGCAGGTAAAAGT-
130 TAGCAGGTAAAAGTAAATGCCTTCCATCCGGGAAGGACATTTTAAGAAA-AAGCAGGTAAAA-TC
* * * **
7599 AAATGCCTTCCGTTCGGG-AGGGCATTTTGGGAAATAGTAGGTAAAATCAAAT
193 AAATGCCTTCCATCCGGGAAGGGAATTTTGGGAAATAACAGGTAAAATCAAAT
* * *
7651 GCCTTCCATCCGGGAAGGGAATTTTGGGAAATAACAGGTAAAGATTAGTGCCTTATGTCCGGGAA
1 GCCTTCCGTCCGGGAAGGGCATTTTGGGAAA-AACAGGTAAAGATTAGTGCCTTACGTCCGGGAA
* *
7716 GGGCGTTTTA-GAAAAACCGGTGACAAATCAGTGCCTTCCGTCCGGGAAGGGCATTTTTGGAAAA
65 GGGCGTTTTAGGAAAAACCGGTAACAAATCAATGCCTTCCGTCCGGGAAGGGCATTTTTGGAAAA
* *
7780 TAGCAGGTAAAAGTAAGTGCCTTCCATCCGGGAAGGACATTTTAAGAAAAAGCGGGTAAAATCAA
130 TAGCAGGTAAAAGTAAATGCCTTCCATCCGGGAAGGACATTTTAAGAAAAAGCAGGTAAAATCAA
*
7845 ATGCCTTCCATCCGGGAAGGGAATTTTGGGAAATAACGGGTAAAATCAAAT
195 ATGCCTTCCATCCGGGAAGGGAATTTTGGGAAATAACAGGTAAAATCAAAT
7896 GCCTTCCGTCCGGGAA-GGCATTTTGGGAAAAACA
1 GCCTTCCGTCCGGGAAGGGCATTTTGGGAAAAACA
7930 AAATTTGAGA
Statistics
Matches: 254, Mismatches: 22, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
243 5 0.02
244 39 0.15
245 143 0.56
246 67 0.26
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (245 bp):
GCCTTCCGTCCGGGAAGGGCATTTTGGGAAAAACAGGTAAAGATTAGTGCCTTACGTCCGGGAAG
GGCGTTTTAGGAAAAACCGGTAACAAATCAATGCCTTCCGTCCGGGAAGGGCATTTTTGGAAAAT
AGCAGGTAAAAGTAAATGCCTTCCATCCGGGAAGGACATTTTAAGAAAAAGCAGGTAAAATCAAA
TGCCTTCCATCCGGGAAGGGAATTTTGGGAAATAACAGGTAAAATCAAAT
Done.