Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014378.1 Corchorus capsularis cultivar CVL-1 contig14399, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47545

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1829--1855
2
13.5
2
100
0
54
48
0
0
51
1.00
2135--2160
7
3.7
7
100
0
52
23
0
0
76
0.78
3017--3066
22
2.3
23
86
6
68
60
6
0
34
1.21
8972--9014
16
2.7
16
79
20
54
41
0
0
58
0.98
8983--9027
23
2.0
23
82
8
56
42
2
0
55
1.12
10423--10470
24
2.0
25
87
4
71
39
2
8
50
1.44
10428--10479
24
2.0
24
82
10
59
40
3
9
46
1.55
10591--10637
10
4.4
10
80
15
58
29
19
2
48
1.60
11348--11406
10
5.7
10
83
13
66
32
16
0
50
1.46
12111--12161
10
4.9
10
80
15
50
33
17
0
49
1.47
10109--12682
761
3.4
752
89
3
3830
37
14
12
35
1.84
12760--12828
27
2.6
27
85
0
93
20
14
18
46
1.84
16979--17030
22
2.4
21
81
18
54
73
1
19
5
1.14
18124--18157
10
3.4
10
87
0
50
32
14
0
52
1.42
22446--22470
13
1.9
13
100
0
50
36
0
16
48
1.46
23265--23339
30
2.5
30
91
0
114
49
14
25
10
1.76
23551--23591
3
13.7
3
100
0
82
65
0
34
0
0.93
31019--31053
17
2.0
18
94
5
63
17
8
17
57
1.64
34550--34584
15
2.3
15
100
0
70
37
25
8
28
1.85
34827--34974
31
4.9
30
76
8
122
39
22
17
19
1.92
34857--34920
28
2.2
28
86
5
83
46
25
12
15
1.81
34873--34930
28
2.0
28
86
3
80
43
25
13
17
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35392--35553
78
2.1
79
90
1
254
37
12
0
50
1.40
47111--47144
6
5.8
6
86
6
52
17
0
0
82
0.67

Tables:   1

The End!