Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014380.1 Corchorus capsularis cultivar CVL-1 contig14401, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16958

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1392--1424
17
1.9
17
88
11
50
39
0
0
60
0.97
6345--6371
2
13.5
2
100
0
54
51
0
0
48
1.00
7125--7150
2
13.0
2
100
0
52
50
50
0
0
1.00
7193--7275
21
3.8
21
78
9
76
21
19
18
40
1.91
7194--7388
24
8.5
24
75
8
111
20
21
16
42
1.90
7232--7321
21
4.1
21
73
10
65
24
18
17
38
1.92
7197--7341
45
3.2
45
82
0
164
20
21
17
40
1.92
7753--7813
21
2.7
23
77
12
72
26
14
14
44
1.84
7782--7883
45
2.3
44
83
8
134
20
21
20
37
1.95
7164--10245
538
5.7
535
84
7
3673
29
23
13
34
1.92
8263--8490
24
9.8
24
71
10
109
20
20
17
41
1.91
8357--8490
21
5.8
23
72
15
89
18
20
19
41
1.91
8887--8972
45
1.9
45
90
0
136
20
22
16
40
1.91
8891--9038
24
6.4
24
75
12
148
16
21
19
41
1.90
8891--9038
69
2.1
69
86
2
199
16
21
19
41
1.90
7900--10067
549
4.0
547
88
4
2867
29
23
13
34
1.92
9394--9590
24
8.6
24
72
13
137
20
21
15
42
1.89
9504--9589
45
1.9
45
97
0
163
13
20
19
45
1.85
9363--9590
24
10.0
23
72
14
125
19
21
16
42
1.88
9407--9590
69
2.7
69
79
7
182
20
21
15
42
1.89
9917--9962
24
1.9
24
86
0
65
23
15
15
45
1.84
9952--10047
45
2.1
45
84
0
120
20
17
20
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10017--10091
24
3.1
24
82
0
96
18
20
16
45
1.86
10741--10787
18
2.6
18
90
6
69
36
19
25
19
1.95

Tables:   1

The End!