Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014384.1 Corchorus capsularis cultivar CVL-1 contig14405, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77288

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7562--7593
2
16.0
2
100
0
64
50
0
0
50
1.00
13361--13394
3
11.7
3
93
6
61
67
0
32
0
0.91
13362--13390
14
2.1
14
100
0
58
65
0
34
0
0.93
13361--13393
17
1.9
17
100
0
66
66
0
33
0
0.92
14395--14477
31
2.8
30
85
5
114
40
15
7
36
1.75
16752--16795
18
2.3
18
84
7
52
15
54
6
22
1.65
16898--16931
16
2.1
16
100
0
68
50
5
5
38
1.51
17016--17074
20
3.0
20
78
12
68
37
0
8
54
1.31
20156--20220
34
1.9
34
90
6
105
49
12
12
26
1.75
20802--20835
16
2.1
16
100
0
68
47
17
23
11
1.81
21078--21201
47
2.9
40
78
18
124
39
25
10
25
1.87
21114--21212
47
2.1
47
100
0
198
43
25
8
23
1.81
21097--21212
47
2.7
42
82
14
155
42
25
8
24
1.82
23015--23152
64
2.1
65
93
1
233
48
16
20
14
1.81
23905--23938
16
2.1
16
94
0
59
50
17
20
11
1.77
24218--24388
47
3.9
40
77
18
137
40
25
9
24
1.85
24254--24399
47
3.1
47
97
0
283
43
25
7
23
1.79
24663--24706
20
2.2
20
100
0
88
72
0
13
13
1.12
28326--28505
73
2.5
72
92
3
276
38
6
6
48
1.54
28392--28500
11
9.3
11
77
15
78
41
4
6
47
1.49
28380--28500
22
5.1
22
74
20
111
41
4
5
47
1.49
33879--33938
31
1.9
31
93
0
102
35
20
11
33
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33879--33950
31
2.3
31
88
4
101
36
18
12
33
1.88
35693--35729
16
2.3
16
90
0
56
2
16
5
75
1.10
43203--43229
2
13.5
2
100
0
54
51
48
0
0
1.00
44522--44592
26
2.7
26
74
21
69
38
0
4
57
1.18
44475--44583
38
2.9
37
76
14
100
38
0
3
56
1.23
45298--45322
11
2.3
11
100
0
50
0
8
28
64
1.22
45301--45410
35
3.1
35
88
3
150
17
11
25
45
1.82
54833--54881
16
3.1
16
88
11
82
16
20
18
44
1.86
56200--56374
46
3.7
46
82
6
208
9
26
24
39
1.86
57224--57407
90
2.0
90
95
0
332
32
23
19
25
1.98
59904--60000
35
2.7
35
85
4
124
20
11
25
42
1.86
63898--63937
20
2.0
20
85
9
55
15
10
10
65
1.48

Tables:   1

The End!