genome.fa.s14385.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014385.1 Corchorus capsularis cultivar CVL-1 contig14406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47148

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5314--5379	31	2.1	31	91	5	107	27	16	4	51	1.64
5320--5386	31	2.1	31	89	8	100	31	13	4	50	1.61
5479--5557	22	3.5	21	83	10	86	37	15	17	29	1.90
5493--5557	24	2.8	23	88	9	89	38	15	15	30	1.88
5705--5760	22	2.6	22	86	8	80	39	3	17	39	1.67
5766--6037	22	12.5	22	71	13	143	43	9	12	33	1.76
5840--5878	21	2.0	19	85	14	53	46	5	7	41	1.55
5864--6012	66	2.3	66	80	4	158	42	10	13	34	1.78
6120--6185	19	3.4	20	83	8	75	43	12	19	24	1.85
6131--6184	19	2.8	19	94	0	90	42	12	24	20	1.87
6175--6648	22	21.7	22	67	14	142	38	9	14	37	1.80
6519--6604	45	1.9	45	83	4	111	33	11	16	38	1.85
7146--7183	19	2.0	19	90	10	60	28	0	0	71	0.87
7353--7459	22	4.9	22	72	12	78	38	11	14	36	1.81
7478--7543	22	2.9	22	79	4	60	31	6	21	40	1.77
7716--7819	21	4.7	22	70	15	72	41	8	14	35	1.77
7764--7948	22	8.3	22	76	6	115	41	9	12	35	1.77
7801--7929	66	2.0	66	81	3	152	41	9	13	35	1.76
8054--8104	20	2.6	20	90	3	77	43	13	15	27	1.85
8241--8344	23	4.6	23	80	8	106	38	8	12	40	1.74
8054--8346	22	13.5	22	67	16	105	39	9	15	35	1.80
8411--8444	17	2.0	17	88	0	50	32	11	20	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8486--8541	22	2.6	21	86	8	76	46	10	16	26	1.79
9668--9696	2	14.5	2	100	0	58	48	0	0	51	1.00
13071--13143	2	41.5	2	70	24	58	53	1	0	45	1.09
13072--13130	19	3.0	19	73	9	64	50	1	0	47	1.11
13069--13145	40	1.9	40	89	5	120	53	1	0	45	1.08
13885--13913	2	14.5	2	100	0	58	48	0	0	51	1.00
16127--16535	135	3.0	135	96	0	737	36	9	18	35	1.84
16710--16734	2	12.5	2	100	0	50	52	0	0	48	1.00
17286--17332	13	3.8	12	78	13	51	40	0	4	55	1.19
17471--17558	15	5.6	16	68	9	65	42	37	10	10	1.73
18281--18644	181	2.0	181	99	0	719	41	15	15	26	1.88
19644--19709	16	4.1	16	72	16	64	13	12	37	36	1.82
19661--19747	32	2.7	32	90	0	129	13	11	36	37	1.81
19643--19737	17	5.8	17	71	13	83	13	12	36	36	1.83
19884--19944	16	3.8	16	78	8	70	6	13	31	49	1.67
19946--20318	185	2.0	186	95	1	669	27	17	22	32	1.96
21164--21284	60	2.0	59	85	6	163	38	21	4	35	1.73
21649--21809	22	7.4	22	72	20	106	39	14	9	36	1.80
21704--21804	44	2.4	44	85	8	129	40	11	11	35	1.79
23305--23370	24	2.6	25	80	11	80	45	1	6	46	1.37
23327--23456	43	3.0	43	87	0	197	41	3	10	44	1.55
23875--24014	16	8.8	15	75	11	102	29	40	22	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23890--24013	32	3.9	32	88	4	171	30	38	21	8	1.84
23875--24022	48	3.1	47	81	8	165	30	39	20	8	1.83
23890--24008	9	14.9	8	67	24	65	30	37	22	9	1.86
23890--24022	16	8.3	16	76	9	128	31	38	21	9	1.84
24535--24616	42	2.0	42	90	0	128	37	19	7	35	1.80
24842--24893	23	2.3	23	89	0	77	30	38	19	11	1.87
24871--24940	16	4.4	16	73	10	63	37	32	17	12	1.87
25912--25946	4	8.5	4	93	6	61	22	2	0	74	0.95
31350--31417	16	4.3	16	74	10	68	8	14	36	39	1.78
31651--31732	42	2.0	42	90	0	128	37	3	19	39	1.69
32562--32653	16	5.7	15	78	16	87	8	19	38	33	1.83
32548--32661	48	2.4	47	76	16	110	8	21	37	31	1.84
32552--32661	32	3.4	32	87	2	150	9	21	37	31	1.85
32697--32728	16	2.1	16	94	5	57	0	15	56	28	1.40
33641--33667	2	13.5	2	100	0	54	48	0	0	51	1.00
35566--35614	24	2.1	24	85	11	66	8	14	28	48	1.72

Tables:   1

The End!