Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014387.1 Corchorus capsularis cultivar CVL-1 contig14408, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25316

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1170--1240
29
2.4
29
88
2
106
16
22
16
43
1.87
1432--1489
29
1.9
30
86
10
82
41
10
24
24
1.86
1449--1509
29
2.1
29
84
0
77
44
11
22
21
1.84
5561--5590
13
2.3
13
100
0
60
0
0
13
86
0.57
10232--10764
267
2.0
267
99
0
1057
24
9
20
45
1.81
13657--13687
15
2.0
16
93
6
55
58
9
12
19
1.62
13743--13767
2
12.5
2
100
0
50
48
0
0
52
1.00
18301--18329
2
15.0
2
92
7
51
48
0
0
51
1.00
19466--19494
2
14.5
2
100
0
58
48
0
0
51
1.00
19563--19606
21
2.0
23
86
8
65
22
13
2
61
1.43
20170--20226
24
2.4
24
93
0
96
26
33
26
14
1.94
20170--20240
24
2.8
24
85
10
81
23
36
26
12
1.91
20178--20268
27
3.5
27
85
4
116
25
38
25
10
1.88
22589--22618
6
5.0
6
91
0
51
86
13
0
0
0.57
25139--25255
59
2.0
60
86
1
164
35
12
12
38
1.82

Tables:   1

The End!