Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01001439.1 Corchorus capsularis cultivar CVL-1 contig01439, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1857
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36


Found at i:1525 original size:14 final size:15

Alignment explanation


    Indices: 1500--1528  Score: 51
    Period size: 14  Copynumber: 2.0  Consensus size: 15

       1490 CAATTTTGTA

                           
       1500 ATTTTATAATTAAGT
          1 ATTTTATAATTAAGT

                           
       1515 ATTTT-TAATTAAGT
          1 ATTTTATAATTAAGT

       1529 TAAAAGCCTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    9  0.64
  15    5  0.36

ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55


Consensus pattern (15 bp):   
ATTTTATAATTAAGT
Done.