Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014390.1 Corchorus capsularis cultivar CVL-1 contig14411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38623

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5372--5423
18
2.6
20
82
14
63
59
0
3
36
1.16
5352--5402
22
2.2
24
80
16
63
56
1
0
41
1.10
5672--6019
171
2.0
171
94
0
615
29
17
24
29
1.97
8230--8278
4
12.2
4
95
0
62
42
0
8
48
1.32
8619--8681
10
6.5
10
72
18
53
25
0
1
73
0.93
8639--8681
18
2.4
18
88
0
59
25
0
2
72
0.97
8620--8685
29
2.3
28
89
7
98
28
0
1
69
0.97
18042--18089
3
16.0
3
100
0
96
66
0
0
33
0.92
24283--24361
31
2.6
31
75
18
85
32
12
3
50
1.58
24460--24536
38
2.1
35
88
7
109
15
16
10
57
1.65
24662--24699
19
2.0
20
85
15
53
28
5
2
63
1.30
24864--25026
22
7.3
22
75
10
116
32
8
20
38
1.83
25062--25437
22
16.9
22
70
11
167
39
9
16
34
1.82
25060--25432
44
8.4
44
72
12
201
39
9
16
33
1.82
25507--25968
22
21.1
22
69
14
178
38
9
15
35
1.81
25704--25791
23
3.7
23
83
6
88
39
7
14
37
1.76
25874--25967
45
2.1
44
82
5
109
34
11
15
38
1.84
26231--26295
30
2.1
31
86
8
89
27
18
4
49
1.67
26596--26638
19
2.1
21
84
16
56
27
6
2
62
1.33
26789--26894
22
4.8
22
78
2
81
33
12
16
36
1.87
27053--27118
22
3.0
22
77
2
62
37
4
19
37
1.73
27061--27118
22
2.7
22
78
2
64
37
5
20
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27162--27399
22
10.8
22
74
9
146
42
10
13
34
1.78
27206--27770
44
12.9
44
67
15
169
41
8
15
34
1.78
27162--27371
66
3.2
65
77
6
172
41
10
14
34
1.79
27480--27549
19
3.5
19
84
9
86
44
10
14
31
1.78
27480--28076
22
27.5
22
70
13
215
39
10
15
35
1.82
27518--27947
66
6.6
66
71
12
253
38
10
15
36
1.81
28763--28811
24
2.0
24
88
0
71
32
14
12
40
1.83
29476--29503
14
2.0
14
100
0
56
21
28
14
35
1.92
31204--31236
10
3.2
10
91
8
57
30
21
21
27
1.98
31205--31240
11
3.4
11
84
7
56
30
19
16
33
1.94
31520--31554
18
1.9
18
88
0
52
45
11
2
40
1.55
31408--31716
103
3.0
102
85
2
377
36
18
10
34
1.85
34096--34136
21
2.0
21
100
0
82
19
9
34
36
1.85
34293--34325
17
1.9
17
93
0
57
27
6
33
33
1.81
36548--36580
6
5.5
6
100
0
66
18
15
0
66
1.25
37731--37811
40
2.0
40
97
0
153
46
12
12
28
1.77

Tables:   1

The End!