Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014396.1 Corchorus capsularis cultivar CVL-1 contig14417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30609

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
275--436
78
2.1
78
90
2
254
38
11
0
50
1.39
528--571
23
1.9
23
85
0
61
38
6
4
50
1.50
1132--1166
13
2.7
13
95
0
61
37
8
17
37
1.80
4126--4153
13
2.2
13
100
0
56
67
0
10
21
1.20
11035--11067
17
2.0
17
88
5
50
24
9
6
60
1.49
13210--13286
40
1.9
39
92
2
127
15
15
6
62
1.52
13394--13435
2
20.5
2
86
13
59
47
4
0
47
1.23
14130--14167
20
1.9
20
88
0
58
31
0
7
60
1.25
14328--14359
13
2.5
13
100
0
64
28
6
9
56
1.55
15589--15858
138
1.9
139
84
3
355
45
10
10
34
1.72
16879--16938
27
2.3
27
85
2
77
61
6
1
30
1.31
18702--18732
16
1.9
16
93
0
53
0
6
22
70
1.09
19114--19444
141
2.3
142
92
2
531
42
10
9
36
1.73
21224--21292
36
1.9
35
85
8
95
15
13
11
59
1.61
23202--23235
13
2.8
12
86
8
50
35
5
5
52
1.50
23581--23614
16
2.1
16
100
0
68
47
17
23
11
1.81
25818--25952
63
2.2
61
91
2
216
49
16
17
16
1.80
26684--26718
16
2.2
16
100
0
70
45
17
25
11
1.81
28558--28668
53
2.1
54
94
1
197
30
10
23
35
1.89

Tables:   1

The End!