Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014398.1 Corchorus capsularis cultivar CVL-1 contig14419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55084

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1657--1868
105
2.0
105
99
0
415
32
13
14
40
1.84
4163--4285
41
3.0
41
98
0
237
36
26
12
25
1.91
8317--8364
15
3.2
15
82
5
53
33
10
8
47
1.68
8524--8548
2
12.5
2
100
0
50
52
0
0
48
1.00
15370--15417
18
2.6
18
78
18
53
45
4
0
50
1.21
15370--15419
21
2.6
19
81
15
59
46
4
0
50
1.20
17429--17457
14
2.1
14
100
0
58
58
27
13
0
1.36
20042--20106
32
2.0
32
100
0
130
9
15
18
56
1.65
25098--25127
13
2.2
14
94
5
53
53
0
0
46
1.00
25195--25247
15
3.5
15
82
12
56
41
1
0
56
1.10
25209--25249
18
2.3
18
91
8
66
36
2
0
60
1.10
25210--25249
21
1.9
21
85
10
55
37
2
0
60
1.11
27149--27194
20
2.3
20
100
0
92
17
17
36
28
1.92
27683--27741
30
2.0
30
89
0
91
49
5
16
28
1.67
33998--34033
12
3.0
12
87
0
54
25
0
0
75
0.81
33999--34055
19
3.0
19
78
14
64
28
0
1
70
0.98
49224--49274
27
1.9
27
92
4
86
54
9
7
27
1.60

Tables:   1

The End!