Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014399.1 Corchorus capsularis cultivar CVL-1 contig14420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46099

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4621--4690
31
2.2
32
82
5
88
28
12
4
54
1.57
4632--4691
31
1.9
31
89
0
93
30
15
3
51
1.59
4735--4853
59
2.0
59
100
0
238
40
3
16
39
1.65
6225--6309
23
3.7
23
84
4
102
38
9
15
36
1.80
6201--6328
23
5.7
21
74
16
80
39
9
14
35
1.79
6293--6340
22
2.2
22
85
7
62
35
12
14
37
1.84
15114--15148
5
7.0
5
100
0
70
20
60
0
20
1.37
17464--17608
75
1.9
75
95
0
263
36
12
17
33
1.88
18742--18891
49
3.1
49
92
0
255
42
22
8
27
1.82
22084--22111
2
14.0
2
100
0
56
50
0
0
50
1.00
25141--25205
32
2.0
32
93
0
112
38
18
26
16
1.92
27422--27459
17
2.3
16
90
4
58
42
0
0
57
0.98
30577--31155
144
4.0
144
90
0
899
33
21
22
22
1.98
35237--35519
49
5.6
50
75
7
216
23
29
15
31
1.96
35453--35874
48
8.4
49
70
11
237
23
26
15
33
1.95
35237--35528
151
1.9
150
87
3
426
23
28
15
31
1.95
35495--35598
54
1.9
53
90
1
163
26
21
13
38
1.90
35600--35867
49
5.5
49
75
3
202
22
27
17
32
1.96
35639--35846
98
2.1
96
79
10
235
21
26
16
34
1.95
37422--37458
19
1.9
19
89
10
58
56
16
0
27
1.40
37479--37563
43
2.1
41
86
8
120
48
11
2
37
1.53
42643--42672
6
5.0
6
100
0
60
66
0
16
16
1.25

Tables:   1

The End!