Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000144.1 Corchorus capsularis cultivar CVL-1 contig00144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1860
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36


Found at i:771 original size:69 final size:69

Alignment explanation


    Indices: 677--817  Score: 282
    Period size: 69  Copynumber: 2.0  Consensus size: 69

        667 TTTTAGTATT

                                                                             
        677 TGAAAAGGAAAACTATAGAACCAATAAAAATAGGTAGCTTTGTGTTGGTTTCTTTTTATTTCTTA
          1 TGAAAAGGAAAACTATAGAACCAATAAAAATAGGTAGCTTTGTGTTGGTTTCTTTTTATTTCTTA

                
        742 TTTA
         66 TTTA

                                                                             
        746 TGAAAAGGAAAACTATAGAACCAATAAAAATAGGTAGCTTTGTGTTGGTTTCTTTTTATTTCTTA
          1 TGAAAAGGAAAACTATAGAACCAATAAAAATAGGTAGCTTTGTGTTGGTTTCTTTTTATTTCTTA

                
        811 TTTA
         66 TTTA

               
        815 TGA
          1 TGA

        818 TTTGTATTAT


Statistics
Matches: 72,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  69   72  1.00

ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40


Consensus pattern (69 bp):   
TGAAAAGGAAAACTATAGAACCAATAAAAATAGGTAGCTTTGTGTTGGTTTCTTTTTATTTCTTA
TTTA
Done.