genome.fa.s14402.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014402.1 Corchorus capsularis cultivar CVL-1 contig14423, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53407

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85--253	24	6.8	24	88	5	248	15	17	37	28	1.91
79--253	50	3.5	50	91	1	289	16	17	37	28	1.91
2525--2635	55	2.0	55	98	0	213	22	14	27	36	1.93
3031--3152	64	1.9	64	82	0	154	12	23	32	31	1.92
3370--3496	45	2.7	47	89	6	186	22	29	16	32	1.96
3462--3537	33	2.3	33	97	0	143	19	31	19	28	1.97
3535--3668	52	2.6	51	84	3	171	20	27	17	34	1.95
3410--4157	158	4.6	165	80	9	565	21	25	18	34	1.96
3664--3699	18	2.0	18	100	0	72	27	16	22	33	1.95
3622--3747	66	1.9	66	86	3	182	23	23	20	33	1.97
3686--4279	51	11.8	51	83	7	594	21	25	18	34	1.96
3570--3783	114	1.8	118	83	5	283	22	24	19	33	1.97
3535--4270	209	3.6	209	89	4	966	21	25	18	34	1.96
3996--4076	27	3.1	27	64	16	71	20	25	17	35	1.95
4133--4213	42	1.9	42	97	0	153	19	22	23	34	1.96
5699--5868	24	6.8	24	87	6	241	15	17	38	28	1.90
5693--5868	50	3.5	50	92	0	298	15	17	38	28	1.91
10771--10816	6	7.7	6	90	0	74	39	0	60	0	0.97
10771--10816	18	2.6	18	100	0	92	39	0	60	0	0.97
21895--21930	17	2.1	17	100	0	72	52	0	22	25	1.47
26849--26877	2	14.5	2	100	0	58	0	0	51	48	1.00
27289--27334	24	1.9	24	100	0	92	36	13	13	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27290--27344	24	2.3	24	90	6	85	41	12	9	36	1.75
29471--29504	18	1.9	18	88	5	52	8	26	14	50	1.72
29475--29512	18	2.2	18	85	4	51	7	34	15	42	1.76
39979--40005	1	27.0	1	100	0	54	100	0	0	0	0.00

Tables:   1

The End!