Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014403.1 Corchorus capsularis cultivar CVL-1 contig14424, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4641
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32


Found at i:3822 original size:2 final size:2

Alignment explanation


    Indices: 3815--3854  Score: 64
    Period size: 2  Copynumber: 20.5  Consensus size: 2

       3805 GAACTTTTAG

                              *                                          
       3815 TA TA TA TA TA -A AA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       3855 TAGTTATTTT


Statistics
Matches: 36,  Mismatches: 1, Indels: 2
        0.92            0.03        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   35  0.97

ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47


Consensus pattern (2 bp):   
TA

Found at i:4624 original size:2 final size:2

Alignment explanation


    Indices: 4617--4641  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       4607 ATGGAATCGT

                                                 
       4617 TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA T


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52


Consensus pattern (2 bp):   
TA

Done.