Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014405.1 Corchorus capsularis cultivar CVL-1 contig14426, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59985

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
194--249
22
2.5
22
80
8
60
42
8
10
37
1.71
216--776
22
25.4
21
71
12
244
35
15
9
40
1.79
255--339
23
3.7
23
80
1
91
38
14
5
41
1.70
821--930
22
4.9
22
82
9
98
37
18
10
33
1.86
821--932
46
2.5
43
81
8
118
37
18
10
33
1.86
1202--1267
31
2.1
31
91
2
105
53
3
13
30
1.55
1209--1267
31
1.9
31
96
0
109
50
3
15
30
1.60
15798--15823
2
13.0
2
100
0
52
50
0
0
50
1.00
16639--16672
2
17.5
2
93
6
61
50
0
0
50
1.00
17090--17128
19
2.1
19
90
0
60
23
30
10
35
1.88
18156--18186
16
1.9
16
93
0
53
54
0
9
35
1.33
28209--28280
29
2.4
29
81
2
81
40
25
12
22
1.89
28908--28972
29
2.2
30
81
10
71
32
23
24
20
1.98
29782--29819
11
3.5
11
85
10
51
57
2
0
39
1.12
30067--30097
15
2.1
15
93
0
53
29
9
6
54
1.57
30066--30190
41
3.0
42
94
3
218
45
6
4
44
1.48
37631--38076
236
1.9
236
95
0
804
41
18
11
28
1.85
44572--44637
31
2.1
31
97
0
123
25
19
9
45
1.80
45036--45069
2
17.0
2
100
0
68
50
0
0
50
1.00
57598--57630
17
1.9
17
100
0
66
30
18
27
24
1.98

Tables:   1

The End!