Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014406.1 Corchorus capsularis cultivar CVL-1 contig14427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68704

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4833--4865
2
16.5
2
100
0
66
48
0
0
51
1.00
5165--5211
21
2.2
21
85
7
60
4
8
29
57
1.48
9951--10077
27
4.7
27
99
0
236
22
27
9
40
1.85
10860--10885
8
3.2
8
100
0
52
61
0
38
0
0.96
13602--13630
14
2.1
14
100
0
58
27
0
72
0
0.85
14098--14170
22
3.4
22
75
17
80
45
15
2
36
1.60
14096--14196
43
2.3
43
98
0
193
45
12
3
37
1.61
14115--14191
21
3.6
22
75
18
90
46
9
5
38
1.58
17319--17359
7
6.1
7
83
11
59
29
2
14
53
1.54
19304--19344
21
2.0
20
85
4
55
0
2
14
82
0.76
19304--19344
14
3.0
14
82
13
50
0
2
14
82
0.76
19304--19336
15
2.2
15
89
10
50
0
0
12
87
0.53
20246--20288
18
2.4
18
88
0
59
9
13
23
53
1.69
24460--24494
18
1.9
18
88
0
52
51
14
8
25
1.70
25913--25971
16
3.6
16
73
15
50
57
0
1
40
1.09
25973--26055
35
2.4
34
86
4
114
43
16
18
21
1.88
26730--26788
31
1.9
30
83
10
75
30
13
6
49
1.68
26777--26957
97
1.9
97
97
0
344
37
11
1
49
1.46
27907--27944
19
2.0
20
85
15
53
28
5
2
63
1.30
28155--28217
22
2.9
22
90
0
90
34
15
15
33
1.90
28259--28492
22
10.6
22
71
9
136
33
10
16
39
1.83
28762--28794
11
2.9
11
95
4
57
27
0
6
66
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28759--28794
12
3.1
12
92
8
65
25
0
8
66
1.19
30757--30790
11
3.2
10
84
15
50
29
2
17
50
1.61
36579--36603
12
2.1
12
100
0
50
16
40
0
44
1.47
37921--38023
52
2.0
52
92
0
170
38
11
10
38
1.77
37730--38140
219
1.9
221
93
3
711
39
12
8
39
1.75
41029--41100
32
2.2
32
97
0
135
23
15
9
51
1.73
45384--45458
29
2.6
29
82
2
87
21
21
17
40
1.92
47958--48060
22
4.6
22
80
1
98
38
17
10
33
1.84
48389--48451
29
2.1
30
82
8
76
46
3
0
50
1.17
48746--48869
22
5.6
22
76
3
106
33
14
8
43
1.75
48791--48869
22
3.5
22
86
3
113
32
12
8
45
1.73
50894--50968
29
2.6
28
83
10
98
41
18
22
17
1.90
55848--55932
31
2.7
31
76
5
82
18
23
24
32
1.97
62511--62616
39
2.9
36
68
18
90
31
22
16
29
1.96
62492--62636
75
2.0
74
85
6
197
31
24
16
27
1.96

Tables:   1

The End!