Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014408.1 Corchorus capsularis cultivar CVL-1 contig14429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54974

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3092--3151
6
10.2
6
79
13
63
80
16
1
1
0.89
3105--3134
13
2.3
13
100
0
60
86
13
0
0
0.57
9334--9373
21
1.9
21
89
0
62
22
42
7
27
1.80
9444--9502
25
2.4
25
91
5
95
35
23
0
40
1.55
9512--9579
26
2.6
26
95
0
118
52
11
1
33
1.47
9512--9579
15
5.1
15
70
26
62
52
11
1
33
1.47
9634--9663
12
2.6
12
94
5
53
83
0
0
16
0.65
19837--19896
30
2.0
30
93
0
102
33
18
13
35
1.89
19829--19898
30
2.5
26
75
20
70
32
20
14
32
1.92
21982--22155
87
2.0
87
98
0
339
37
14
13
34
1.86
38131--38171
2
21.5
2
87
9
59
51
2
0
46
1.14
38130--38175
10
4.4
10
84
10
56
50
6
0
43
1.28
41227--41260
1
34.0
1
100
0
68
0
0
0
100
0.00
52374--52416
18
2.4
18
84
0
59
25
13
20
39
1.90
52956--53021
31
2.1
31
86
5
89
34
15
4
45
1.66
53373--53410
19
2.0
20
85
15
53
28
5
2
63
1.30
53576--53682
22
4.9
22
73
11
94
36
10
15
37
1.82
53577--54754
44
27.4
44
66
16
163
37
9
16
36
1.81
53627--53705
22
3.6
22
78
13
90
37
12
13
35
1.83
53574--53699
66
1.9
66
80
6
148
35
10
16
37
1.83
53575--53759
22
8.3
22
72
7
77
32
8
18
40
1.80
53795--54183
22
17.7
21
68
16
132
39
9
16
34
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53954--54054
21
4.6
22
76
19
95
43
10
12
32
1.78
54014--54180
66
2.5
64
75
12
153
41
8
14
34
1.77
54288--54339
20
2.6
20
93
0
86
42
13
17
26
1.86
54288--54754
22
21.5
22
71
8
217
37
10
16
35
1.83
54391--54508
60
2.0
61
82
1
148
42
7
15
34
1.75
54452--54558
23
4.7
23
79
4
94
41
9
13
36
1.76
54288--54841
22
25.5
22
69
11
177
38
10
15
35
1.82

Tables:   1

The End!