Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014410.1 Corchorus capsularis cultivar CVL-1 contig14431, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104884

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
828--866
19
2.1
19
95
0
69
2
25
10
61
1.41
8270--8317
25
1.9
25
95
0
87
47
14
16
20
1.82
21032--21064
6
5.5
6
89
10
50
81
0
18
0
0.68
21040--21064
11
2.3
11
100
0
50
84
0
16
0
0.63
21012--21064
17
3.1
17
78
13
56
79
0
15
5
0.91
23698--23749
26
2.0
26
100
0
104
38
26
0
34
1.57
34189--34226
5
7.8
5
94
5
60
84
0
13
2
0.73
46094--46187
49
1.9
49
97
0
179
36
10
19
34
1.86
47503--47530
14
2.0
14
100
0
56
57
0
35
7
1.26
50340--50390
24
2.1
24
92
0
84
37
5
13
43
1.69
51996--52109
37
3.2
35
67
20
83
30
12
13
43
1.80
51945--52195
74
3.5
73
85
4
339
31
14
12
41
1.83
53437--53659
110
2.0
110
95
0
401
29
19
17
33
1.95
56771--56857
42
2.0
42
86
4
120
36
32
9
21
1.85
59325--59404
40
2.0
40
90
0
124
22
23
22
31
1.99
60211--60681
58
8.2
58
92
4
751
38
28
13
18
1.89
61618--61876
127
2.0
127
99
0
509
29
27
15
27
1.96
62053--62471
72
5.8
72
90
1
558
21
26
19
31
1.97
65701--65791
42
2.1
42
85
4
119
34
31
13
20
1.91
67799--67883
33
2.6
32
86
3
107
15
38
31
14
1.87
83224--83262
14
2.6
14
88
8
51
48
35
5
10
1.59
83799--83834
14
2.5
14
95
4
63
50
0
19
30
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85372--85398
2
13.5
2
100
0
54
51
0
0
48
1.00
91343--91407
31
2.1
31
91
5
105
27
16
4
50
1.65
91687--91848
22
7.4
22
79
4
132
30
9
20
38
1.86
91960--92264
22
13.7
21
69
18
131
41
9
13
35
1.77
92035--92289
22
11.6
23
72
18
138
42
9
13
34
1.75
92119--92286
44
3.8
44
74
12
157
42
8
11
36
1.72
92116--92264
66
2.3
66
84
4
194
42
8
12
36
1.73
92370--92420
19
2.6
20
93
6
95
43
11
19
25
1.85
92408--92903
22
22.7
22
70
13
193
38
10
14
36
1.80
92408--92772
44
8.4
43
71
14
223
37
9
14
37
1.80
92472--92589
60
2.0
61
83
5
150
40
7
15
36
1.76
93014--93045
2
16.0
2
100
0
64
50
0
0
50
1.00
101594--101633
4
10.0
4
100
0
80
25
0
0
75
0.81

Tables:   1

The End!