Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014414.1 Corchorus capsularis cultivar CVL-1 contig14435, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45531

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10625--10667
22
2.0
22
86
9
61
32
25
6
34
1.83
15725--15793
34
2.0
34
94
0
120
34
14
23
27
1.94
21312--21441
65
2.0
66
96
3
246
37
15
18
28
1.91
27623--27671
23
2.1
23
100
0
98
34
4
20
40
1.71
28822--28888
25
2.7
25
83
0
80
28
23
20
26
1.99
29910--29942
2
16.5
2
100
0
66
51
0
0
48
1.00
31153--31301
32
4.6
32
78
8
140
12
37
38
12
1.80
31372--31485
33
3.5
32
80
11
108
12
41
34
12
1.80
31555--31666
32
3.5
32
92
1
170
15
26
41
16
1.88
32013--32039
13
2.1
13
100
0
54
48
22
7
22
1.75
33685--33713
14
2.1
14
100
0
58
58
6
0
34
1.25
35207--35383
87
2.0
87
96
0
327
49
19
11
19
1.78
37791--37820
1
30.0
1
100
0
60
100
0
0
0
0.00
39735--39815
24
3.4
24
92
0
126
18
24
23
33
1.97
45497--45531
2
17.5
2
100
0
70
51
0
0
48
1.00

Tables:   1

The End!