Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014416.1 Corchorus capsularis cultivar CVL-1 contig14437, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24500
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:17388 original size:24 final size:24

Alignment explanation


    Indices: 17361--17408  Score: 96
    Period size: 24  Copynumber: 2.0  Consensus size: 24

      17351 TAAATGCGCT

                                    
      17361 AAAATCATTTCTGACTTGCCTAAC
          1 AAAATCATTTCTGACTTGCCTAAC

                                    
      17385 AAAATCATTTCTGACTTGCCTAAC
          1 AAAATCATTTCTGACTTGCCTAAC

      17409 CTGGGAAATG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   24  1.00

ACGTcount: A:0.33, C:0.25, G:0.08, T:0.33


Consensus pattern (24 bp):   
AAAATCATTTCTGACTTGCCTAAC

Found at i:22856 original size:53 final size:53

Alignment explanation


    Indices: 22776--22881  Score: 212
    Period size: 53  Copynumber: 2.0  Consensus size: 53

      22766 GTGCAAAATA

                                                                 
      22776 AGGGTGACGCATAAGGAATCCTAAGTAGCAAGCTACTATATTAAGGACCCCTT
          1 AGGGTGACGCATAAGGAATCCTAAGTAGCAAGCTACTATATTAAGGACCCCTT

                                                                 
      22829 AGGGTGACGCATAAGGAATCCTAAGTAGCAAGCTACTATATTAAGGACCCCTT
          1 AGGGTGACGCATAAGGAATCCTAAGTAGCAAGCTACTATATTAAGGACCCCTT

      22882 CCCCTATAAA


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   53  1.00

ACGTcount: A:0.34, C:0.21, G:0.23, T:0.23


Consensus pattern (53 bp):   
AGGGTGACGCATAAGGAATCCTAAGTAGCAAGCTACTATATTAAGGACCCCTT
Done.