Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014417.1 Corchorus capsularis cultivar CVL-1 contig14438, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114708

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--32
2
16.0
2
100
0
64
50
0
0
50
1.00
4262--4292
16
1.9
16
100
0
62
12
6
25
54
1.62
4354--4412
26
2.2
26
96
3
109
50
6
27
15
1.68
4722--4759
18
2.1
18
95
0
67
28
5
36
28
1.79
12935--12978
22
2.0
22
90
0
70
43
11
29
15
1.82
13087--13123
17
2.2
17
95
0
65
43
27
5
24
1.76
28441--28544
29
3.6
29
97
0
199
19
17
21
42
1.89
30064--30113
20
2.5
19
87
12
66
70
0
30
0
0.88
30065--30110
22
2.0
23
84
12
60
73
0
26
0
0.83
30072--30113
10
4.4
10
82
11
61
69
0
30
0
0.89
30579--30625
24
1.9
24
86
4
67
48
12
6
31
1.66
31054--31200
79
1.9
79
82
0
186
39
21
13
25
1.90
31160--31306
21
7.0
21
86
0
186
36
21
14
28
1.92
31160--31306
63
2.3
63
88
2
206
36
21
14
28
1.92
32030--32064
16
2.2
16
89
0
52
40
11
0
48
1.39
32402--32449
3
16.0
3
78
8
53
62
4
2
31
1.26
32417--32449
16
2.1
16
94
0
57
63
3
0
33
1.10
33503--33583
42
1.9
42
94
0
144
30
19
9
39
1.84
40382--40415
2
17.0
2
87
0
50
47
5
0
47
1.26
44488--44524
19
1.9
19
88
0
56
40
5
10
43
1.63
50920--50956
2
19.0
2
94
5
67
51
0
0
48
1.00
54189--54221
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55989--56022
17
2.0
17
100
0
68
29
17
29
23
1.97
56145--56219
38
2.0
38
94
0
132
40
20
17
22
1.92
56338--56382
15
3.0
15
76
0
54
33
40
2
24
1.68
61164--61191
2
14.0
2
100
0
56
0
0
50
50
1.00
65752--65964
112
1.9
112
88
2
322
28
24
7
39
1.81
68608--68709
51
2.0
51
100
0
204
39
23
5
31
1.79
68608--68735
51
2.5
51
88
5
152
39
22
5
32
1.77
70697--70795
3
33.0
3
93
0
171
1
1
31
66
1.05
72162--72208
2
23.5
2
100
0
94
0
48
0
51
1.00
75016--75051
3
12.0
3
100
0
72
0
33
0
66
0.92
75049--75108
2
30.0
2
100
0
120
0
50
0
50
1.00
78331--78414
33
2.6
34
92
5
138
54
11
11
21
1.68
78419--78494
38
2.0
38
97
0
143
44
9
5
40
1.59
81891--81942
23
2.2
24
82
3
61
23
5
5
65
1.36
84356--84449
42
2.2
42
90
0
143
20
34
28
17
1.95
95906--95945
20
2.0
20
85
0
53
5
15
12
67
1.38
98012--98133
65
1.9
65
91
0
199
33
8
21
36
1.83
101671--101763
45
2.1
45
100
0
186
24
8
23
43
1.82
111096--111184
43
2.1
43
97
0
169
38
24
15
21
1.92

Tables:   1

The End!