Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01014421.1 Corchorus capsularis cultivar CVL-1 contig14442, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 47419
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Found at i:4441 original size:41 final size:41
Alignment explanation
Indices: 4384--4466 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
4374 GAAATTGAAG
4384 TTGTCAACTTTTCATACTAAATGGAATTGTTTTTGCCAAGA
1 TTGTCAACTTTTCATACTAAATGGAATTGTTTTTGCCAAGA
4425 TTGTCAACTTTTCATACTAAATGGAATTGTTTTTGCCAAGA
1 TTGTCAACTTTTCATACTAAATGGAATTGTTTTTGCCAAGA
4466 T
1 T
4467 CGTTTGTCGC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.42
Consensus pattern (41 bp):
TTGTCAACTTTTCATACTAAATGGAATTGTTTTTGCCAAGA
Found at i:12682 original size:62 final size:62
Alignment explanation
Indices: 12584--12710 Score: 218
Period size: 62 Copynumber: 2.0 Consensus size: 62
12574 TCATAATAGC
*
12584 AAACACCTTGACTGCATATAATAGAAGTGAAAACAAATAATAAATCCCTAATAATTTTAGGA
1 AAACACCTTGACTGCATATAAGAGAAGTGAAAACAAATAATAAATCCCTAATAATTTTAGGA
* * *
12646 AAACACCTTGACTGCATATAAGAGAATTGGAGACAAATAATAAATCCCTAATAATTTTAGGA
1 AAACACCTTGACTGCATATAAGAGAAGTGAAAACAAATAATAAATCCCTAATAATTTTAGGA
12708 AAA
1 AAA
12711 TTATTCAATA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.48, C:0.14, G:0.13, T:0.25
Consensus pattern (62 bp):
AAACACCTTGACTGCATATAAGAGAAGTGAAAACAAATAATAAATCCCTAATAATTTTAGGA
Found at i:15369 original size:20 final size:20
Alignment explanation
Indices: 15344--15383 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
15334 AATGTATCAT
15344 TAACAACAATAAGTAATCTA
1 TAACAACAATAAGTAATCTA
15364 TAACAACAATAAGTAATCTA
1 TAACAACAATAAGTAATCTA
15384 CCTACCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.55, C:0.15, G:0.05, T:0.25
Consensus pattern (20 bp):
TAACAACAATAAGTAATCTA
Found at i:15742 original size:18 final size:18
Alignment explanation
Indices: 15707--15742 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15697 TACAAAATTT
*
15707 CACATTGTTTCTTCAAAA
1 CACATTGTTTCTTAAAAA
15725 CACATTGTTTCTTAAAAA
1 CACATTGTTTCTTAAAAA
15743 AAAAATTGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.19, G:0.06, T:0.39
Consensus pattern (18 bp):
CACATTGTTTCTTAAAAA
Found at i:15966 original size:70 final size:70
Alignment explanation
Indices: 15884--16116 Score: 297
Period size: 70 Copynumber: 3.2 Consensus size: 70
15874 TTATTTAGGT
* * *
15884 TTTTA-TAGTTTTACTCAACTAAAAACTTTATTTTTATTTAATTAAATATAATATCTTTATAATT
1 TTTTACTA-TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCTTTATAATT
15948 ATTTTA
65 ATTTTA
15954 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATAT-CTT-T-A-TA
*
16019 TTATATTTTACCA
62 AT-TATTTT---A
* * *
16032 TTTTACTATTTTACTCAACTAAAAACTCAATTTTTATATAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCTTTATAATTA
*
16097 TTATA
66 TTTTA
*
16102 TTTTACAATTTTACT
1 TTTTACTATTTTACT
16117 ATTTTAGTTA
Statistics
Matches: 144, Mismatches: 10, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
70 63 0.44
71 5 0.03
72 1 0.01
73 6 0.04
74 5 0.03
75 7 0.05
76 1 0.01
77 2 0.01
78 54 0.38
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.50
Consensus pattern (70 bp):
TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCTTTATAATTA
TTTTA
Found at i:16037 original size:78 final size:77
Alignment explanation
Indices: 15884--16122 Score: 350
Period size: 78 Copynumber: 3.2 Consensus size: 77
15874 TTATTTAGGT
* * *
15884 TTTTA-TAGTTTTACTCAACTAAAAACTTTATTTTTATTTAATTAAATATAATAT-CTT-T-A-T
1 TTTTACTA-TTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACT
*
15944 AAT-TATTTT--A
65 ATTATATTTTACA
15954 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
16019 TTATATTTTACCA
66 TTATATTTTA-CA
*
16032 TTTTACTATTTTACTCAACTAAAAACTCAATTTTTATATAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
16097 TTATATTTTACAA
66 TTATATTTTAC-A
16110 TTTTACTATTTTA
1 TTTTACTATTTTA
16123 GTTAAAAAAA
Statistics
Matches: 154, Mismatches: 5, Indels: 12
0.90 0.03 0.07
Matches are distributed among these distances:
70 48 0.31
71 5 0.03
72 1 0.01
73 1 0.01
74 3 0.02
75 6 0.04
77 1 0.01
78 89 0.58
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.50
Consensus pattern (77 bp):
TTTTACTATTTTACTCAACTAAAAACTCTATTTTTATATAATTAAATCTAATATCCTTATAACTA
TTATATTTTACA
Found at i:16939 original size:70 final size:70
Alignment explanation
Indices: 16823--16977 Score: 215
Period size: 70 Copynumber: 2.2 Consensus size: 70
16813 TTATTTAAAC
**
16823 TTTTA-TAGTTTTACTCAACTAAAAACTCTATATTTATTTAACTAAATCTAATATTTTTATAACT
1 TTTTACTA-TTTTACTCAACTAAAAACTCTATATTTATTTAACTAAATCTAATATCCTTATAACT
16887 ATTTTTA
65 A-TTTTA
* * *
16894 TTTTACTATTTTATTCAACT-AAAACTCTATTTTTATTTAATTAAATCTAATATCCTTATAACTA
1 TTTTACTATTTTACTCAACTAAAAACTCTATATTTATTTAACTAAATCTAATATCCTTATAACTA
16958 TTTTA
66 TTTTA
* *
16963 GTTTACCATTTTACT
1 TTTTACTATTTTACT
16978 ATTTTAAATA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
69 17 0.23
70 40 0.53
71 16 0.21
72 2 0.03
ACGTcount: A:0.34, C:0.13, G:0.01, T:0.52
Consensus pattern (70 bp):
TTTTACTATTTTACTCAACTAAAAACTCTATATTTATTTAACTAAATCTAATATCCTTATAACTA
TTTTA
Found at i:18470 original size:3 final size:3
Alignment explanation
Indices: 18464--18504 Score: 73
Period size: 3 Copynumber: 13.7 Consensus size: 3
18454 TTTTTTTTTA
*
18464 CTT CTT CTT CAT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CT
18505 CCAGGAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.02, C:0.34, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:19139 original size:24 final size:23
Alignment explanation
Indices: 19108--19157 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 23
19098 AGGCATTGCC
*
19108 CTGATTTTAGGCTTGCTCTGTTT
1 CTGATTTTAGGCATGCTCTGTTT
19131 CTGAGTTTTAGGCATGCTCTGTTT
1 CTGA-TTTTAGGCATGCTCTGTTT
19155 CTG
1 CTG
19158 TTAAATGTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.10, C:0.18, G:0.24, T:0.48
Consensus pattern (23 bp):
CTGATTTTAGGCATGCTCTGTTT
Found at i:22639 original size:12 final size:12
Alignment explanation
Indices: 22622--22683 Score: 90
Period size: 12 Copynumber: 5.2 Consensus size: 12
22612 TCTTCACCAT
*
22622 CTCTTTCTTCAG
1 CTCTTTCTTCAA
22634 CTCTTTCTTCAA
1 CTCTTTCTTCAA
22646 C-CATTTCTTCAA
1 CTC-TTTCTTCAA
22658 CTCTTTCTTCAA
1 CTCTTTCTTCAA
*
22670 CTCTTGCTTCAA
1 CTCTTTCTTCAA
22682 CT
1 CT
22684 AGATCTGGAG
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
11 1 0.02
12 44 0.96
13 1 0.02
ACGTcount: A:0.16, C:0.34, G:0.03, T:0.47
Consensus pattern (12 bp):
CTCTTTCTTCAA
Found at i:23872 original size:15 final size:15
Alignment explanation
Indices: 23848--23881 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
23838 GTTAAAGGGT
23848 TTTTACTTTATTTTC
1 TTTTACTTTATTTTC
*
23863 TTTTATTTTATTTTC
1 TTTTACTTTATTTTC
23878 TTTT
1 TTTT
23882 TCCGCCAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.09, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTACTTTATTTTC
Found at i:24580 original size:9 final size:9
Alignment explanation
Indices: 24544--24586 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
24534 ACTATATTTG
24544 CATTTAGAGT
1 CATTTAG-GT
24554 CATTTAGGGT
1 CATTTA-GGT
**
24564 TGTTTAGGT
1 CATTTAGGT
24573 CATTTAGGT
1 CATTTAGGT
24582 CATTT
1 CATTT
24587 TGTAGAACCG
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
9 15 0.54
10 12 0.43
11 1 0.04
ACGTcount: A:0.21, C:0.09, G:0.23, T:0.47
Consensus pattern (9 bp):
CATTTAGGT
Found at i:28183 original size:49 final size:49
Alignment explanation
Indices: 28067--28429 Score: 471
Period size: 49 Copynumber: 7.4 Consensus size: 49
28057 TTACCTACTT
28067 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTA-TTTTACTTGCTA
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
*
28115 TTTCCCAAAACGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
* * *
28164 TTTCCCAAAGCGCCGTTCCCAAACGGAAGTCATTTATTTTTACTTGCTA
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
*
28213 TTTCCCAAAGCGCCCTTCTCAGACGGAAGCCATTTATTTTTACTTGCTA
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
* * ** *
28262 TTTCCCAAAGCACCCTTCCCAGACGGAAGCCATTCACCTTTACTTGTTA
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
* ***
28311 TTTCCCAAAACGCCCTTCCCAGACGGAAGCCATTTATTTTTACCCACT-
1 TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
* * * * ** *
28359 TTTCCCCAAAGTGCCCTT-CCAGGACGGAAGACACTAATTTACACTTGCTT
1 TTT-CCCAAAGCGCCCTTCCCA-GACGGAAGCCATTTATTTTTACTTGCTA
* * *
28409 TTTCCTAAAACACCCTTCCCA
1 TTTCCCAAAGCGCCCTTCCCA
28430 TATGGAAGGC
Statistics
Matches: 272, Mismatches: 38, Indels: 8
0.86 0.12 0.03
Matches are distributed among these distances:
48 41 0.15
49 225 0.83
50 6 0.02
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.31
Consensus pattern (49 bp):
TTTCCCAAAGCGCCCTTCCCAGACGGAAGCCATTTATTTTTACTTGCTA
Found at i:30690 original size:22 final size:21
Alignment explanation
Indices: 30665--30706 Score: 75
Period size: 22 Copynumber: 2.0 Consensus size: 21
30655 TCATAGATGC
30665 AAATATATATATATATTATATA
1 AAATATATATATATA-TATATA
30687 AAATATATATATATATATAT
1 AAATATATATATATATATAT
30707 TAGATGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAATATATATATATATATATA
Found at i:30719 original size:19 final size:17
Alignment explanation
Indices: 30697--30754 Score: 54
Period size: 15 Copynumber: 3.7 Consensus size: 17
30687 AAATATATAT
30697 ATATATATATTAGATGC
1 ATATATATATTAGATGC
30714 A-A-ATATATTAGATGC
1 ATATATATATTAGATGC
* * *
30729 AAATGTATA-TATAT--
1 ATATATATATTAGATGC
30743 ATATATATATTA
1 ATATATATATTA
30755 TAAAGATTTG
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
14 7 0.21
15 16 0.47
16 6 0.18
17 5 0.15
ACGTcount: A:0.47, C:0.03, G:0.09, T:0.41
Consensus pattern (17 bp):
ATATATATATTAGATGC
Found at i:30721 original size:2 final size:2
Alignment explanation
Indices: 30667--30706 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
30657 ATAGATGCAA
*
30667 AT AT AT AT AT AT AT -T AT AT A- AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
30707 TAGATGCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
1 2 0.06
2 33 0.94
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:30738 original size:17 final size:15
Alignment explanation
Indices: 30701--30732 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
30691 ATATATATAT
30701 ATATATTAGATGCAA
1 ATATATTAGATGCAA
30716 ATATATTAGATGCAA
1 ATATATTAGATGCAA
30731 AT
1 AT
30733 GTATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.12, T:0.34
Consensus pattern (15 bp):
ATATATTAGATGCAA
Found at i:33448 original size:51 final size:51
Alignment explanation
Indices: 33389--33492 Score: 208
Period size: 51 Copynumber: 2.0 Consensus size: 51
33379 AAACAACTAC
33389 TATGTTTTTATAGTTGATAAGGTTATCAAGAGAGTAACTAAGGTTTGGTTT
1 TATGTTTTTATAGTTGATAAGGTTATCAAGAGAGTAACTAAGGTTTGGTTT
33440 TATGTTTTTATAGTTGATAAGGTTATCAAGAGAGTAACTAAGGTTTGGTTT
1 TATGTTTTTATAGTTGATAAGGTTATCAAGAGAGTAACTAAGGTTTGGTTT
33491 TA
1 TA
33493 AAGTTCAAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 53 1.00
ACGTcount: A:0.30, C:0.04, G:0.23, T:0.43
Consensus pattern (51 bp):
TATGTTTTTATAGTTGATAAGGTTATCAAGAGAGTAACTAAGGTTTGGTTT
Found at i:34825 original size:22 final size:24
Alignment explanation
Indices: 34799--34842 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
34789 AGAAAAGAAG
34799 GAAAGGGGAAG-AGAG-GAAAACA
1 GAAAGGGGAAGAAGAGAGAAAACA
*
34821 GAAAGTGGAAGAAGAGAGAAAA
1 GAAAGGGGAAGAAGAGAGAAAA
34843 GAGAGCTGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 10 0.53
23 4 0.21
24 5 0.26
ACGTcount: A:0.57, C:0.02, G:0.39, T:0.02
Consensus pattern (24 bp):
GAAAGGGGAAGAAGAGAGAAAACA
Found at i:35610 original size:13 final size:13
Alignment explanation
Indices: 35592--35620 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
35582 CTATAGGTAC
35592 TTTTTTTTAATAA
1 TTTTTTTTAATAA
35605 TTTTTTTTAATAA
1 TTTTTTTTAATAA
35618 TTT
1 TTT
35621 AACTCCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTTTTTTAATAA
Found at i:37465 original size:34 final size:34
Alignment explanation
Indices: 37422--37517 Score: 183
Period size: 34 Copynumber: 2.8 Consensus size: 34
37412 GAAGAAAAAG
37422 TAAATGCAATGTGATGAAATAGACTATATCAACA
1 TAAATGCAATGTGATGAAATAGACTATATCAACA
37456 TAAATGCAATGTGATGAAATAGACTATATCAACA
1 TAAATGCAATGTGATGAAATAGACTATATCAACA
*
37490 TAAATGCAATGTGATGAAGTAGACTATA
1 TAAATGCAATGTGATGAAATAGACTATA
37518 CCTATCTACT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.46, C:0.10, G:0.17, T:0.27
Consensus pattern (34 bp):
TAAATGCAATGTGATGAAATAGACTATATCAACA
Found at i:40839 original size:66 final size:66
Alignment explanation
Indices: 40768--40908 Score: 219
Period size: 66 Copynumber: 2.1 Consensus size: 66
40758 GTTGTGGTTG
* * * *
40768 TGGTGGTGCAATGGGACTCCGTGGCGCCGGTGGTGGTAATTTTGGAGGGGAAGGGGTGGTGGGAG
1 TGGTGGTGCAATAGGACTACGTGGCGCCAGTGGAGGTAATTTTGGAGGGGAAGGGGTGGTGGGAG
40833 A
66 A
* * *
40834 TGGTGGTGTAATAGGATTACGTGGCGCCAGTGGAGGTAGTTTTGGAGGGGAAGGGGTGGTGGGAG
1 TGGTGGTGCAATAGGACTACGTGGCGCCAGTGGAGGTAATTTTGGAGGGGAAGGGGTGGTGGGAG
40899 A
66 A
40900 TGGTGGTGC
1 TGGTGGTGC
40909 TTTGGGGGAG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.16, C:0.09, G:0.51, T:0.24
Consensus pattern (66 bp):
TGGTGGTGCAATAGGACTACGTGGCGCCAGTGGAGGTAATTTTGGAGGGGAAGGGGTGGTGGGAG
A
Found at i:46560 original size:20 final size:20
Alignment explanation
Indices: 46531--46574 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
46521 TTTTAAATAG
*
46531 TAATAGTAAT-TAGTAATAAA
1 TAATAATAATATA-TAATAAA
*
46551 TAATAATAATATATAATCAA
1 TAATAATAATATATAATAAA
46571 TAAT
1 TAAT
46575 CATCATAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (20 bp):
TAATAATAATATATAATAAA
Found at i:47088 original size:2 final size:2
Alignment explanation
Indices: 47083--47109 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
47073 AATATATTCT
47083 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
47110 ATGTATATTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Done.