Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014423.1 Corchorus capsularis cultivar CVL-1 contig14444, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111614

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3969--4004
14
2.6
14
91
8
56
44
0
0
55
0.99
7438--7471
1
34.0
1
100
0
68
100
0
0
0
0.00
9509--9556
3
15.7
3
79
12
53
66
0
0
33
0.92
17894--17944
2
25.5
2
91
0
84
45
3
0
50
1.20
21191--21226
1
36.0
1
91
0
54
94
2
2
0
0.37
21229--21253
2
12.5
2
100
0
50
52
48
0
0
1.00
23722--23772
6
8.7
6
87
12
70
37
11
0
50
1.39
26020--26048
3
9.7
3
100
0
58
68
0
0
31
0.89
33062--33094
7
4.9
7
92
7
59
84
0
15
0
0.61
33062--33094
13
2.5
13
95
5
57
84
0
15
0
0.61
34735--34849
61
1.9
61
90
0
185
33
17
10
39
1.84
35044--35072
2
14.5
2
100
0
58
48
0
0
51
1.00
39318--39362
23
2.0
23
86
8
65
22
13
11
53
1.71
47112--47166
28
2.0
29
82
10
71
23
3
23
49
1.66
47382--47426
24
1.9
23
86
13
65
53
17
11
17
1.72
54123--54194
29
2.4
29
88
2
108
19
19
16
44
1.87
55148--55217
30
2.4
30
83
7
81
21
25
8
44
1.80
55252--55322
35
2.0
35
86
0
97
30
25
26
16
1.97
55261--55335
35
2.2
33
79
6
80
30
28
24
17
1.97
55413--55479
29
2.3
30
89
2
109
43
11
19
25
1.85
55917--55954
20
1.9
20
94
0
67
57
21
0
21
1.40
60264--60827
292
2.0
284
88
6
830
34
16
14
35
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68111--68190
36
2.2
36
86
0
97
16
23
25
35
1.95
69917--69964
24
2.0
24
95
0
87
20
10
31
37
1.87
70122--70185
24
2.7
24
90
2
94
20
10
35
32
1.87
69915--70331
219
1.9
215
93
1
717
23
14
26
36
1.93
77575--77612
20
1.9
20
84
10
51
18
0
2
78
0.86
79991--80250
126
2.0
126
88
6
382
28
21
11
38
1.88
80959--80987
14
2.1
14
100
0
58
41
6
17
34
1.76
84355--84404
21
2.4
21
79
0
64
40
10
20
30
1.85
85577--85766
31
6.5
31
79
11
193
16
21
26
35
1.95
85577--85766
62
3.2
61
81
10
216
16
21
26
35
1.95
85655--85757
53
1.9
53
88
0
152
16
18
26
38
1.92
94571--94595
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!