Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014426.1 Corchorus capsularis cultivar CVL-1 contig14447, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61296

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
347--444
49
2.0
49
100
0
196
22
0
22
55
1.44
5355--5387
9
3.8
9
92
4
50
87
0
12
0
0.53
5355--5384
15
2.0
15
93
0
51
90
0
10
0
0.47
13338--13404
30
2.2
31
79
12
77
28
23
19
28
1.98
20043--20089
14
3.1
15
85
11
53
74
4
19
2
1.09
27927--27989
32
2.0
33
90
6
103
30
17
4
47
1.68
27933--28000
30
2.2
32
86
7
95
32
14
4
48
1.64
28159--28609
168
2.7
166
84
3
557
39
15
15
30
1.88
29529--29566
19
2.0
20
85
15
53
26
5
5
63
1.37
29730--29834
22
4.8
21
76
6
102
38
10
15
36
1.82
29760--29858
44
2.2
45
89
7
148
36
11
17
35
1.85
29771--29891
46
2.7
46
83
10
135
34
9
18
37
1.84
29728--29906
22
8.0
22
72
9
94
34
9
17
37
1.83
29953--30085
22
6.1
21
75
13
92
36
6
20
36
1.79
29952--30052
44
2.3
44
80
8
107
35
8
20
34
1.84
30137--30226
22
4.0
23
80
13
98
40
8
14
36
1.77
30146--30210
21
2.8
24
86
11
91
43
9
13
33
1.76
30466--30690
22
10.4
22
70
13
83
42
8
14
34
1.76
30442--30673
44
5.4
44
70
14
135
42
7
13
36
1.73
30611--30694
23
3.7
23
87
1
116
39
8
13
39
1.74
30874--30922
22
2.2
22
85
7
64
51
4
16
28
1.63
31002--31052
22
2.4
22
80
9
61
39
7
7
45
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31213--31242
5
6.0
5
92
0
51
3
20
36
40
1.69
43637--43708
37
2.0
36
97
2
135
38
23
12
25
1.90
43638--43725
37
2.4
37
84
7
90
39
22
13
23
1.90
51424--51496
38
2.0
37
86
7
105
21
12
12
53
1.71
52652--52677
7
3.7
7
100
0
52
42
15
11
30
1.82
52872--52905
2
17.0
2
100
0
68
50
0
0
50
1.00
57965--58094
63
2.0
65
89
5
201
42
16
13
27
1.86

Tables:   1

The End!