genome.fa.s14429.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014429.1 Corchorus capsularis cultivar CVL-1 contig14450, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148697

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
812--856	23	2.0	23	91	4	74	33	33	17	15	1.92
1765--2125	182	2.0	177	89	2	551	26	12	13	47	1.78
4237--4273	19	1.9	19	88	0	56	70	0	5	24	1.08
4951--4978	3	9.3	3	100	0	56	35	0	0	64	0.94
5056--5109	27	2.0	27	100	0	90	40	22	3	33	1.71
5409--5435	7	3.9	7	100	0	54	88	0	11	0	0.50
12576--12613	19	2.0	19	94	0	67	39	7	15	36	1.77
17599--17629	15	2.1	15	100	0	62	12	19	35	32	1.90
17614--17678	26	2.6	25	87	4	96	16	18	35	29	1.93
17581--17718	65	2.1	65	94	4	242	15	18	34	30	1.93
17657--17694	15	2.4	16	86	13	60	13	21	36	28	1.91
17664--17694	15	2.1	15	100	0	62	12	19	35	32	1.90
17644--17733	40	2.3	40	92	1	146	16	18	32	32	1.94
17683--17794	25	4.5	25	74	13	115	16	16	33	33	1.92
18548--18576	12	2.3	13	94	5	51	72	13	0	13	1.13
19858--19992	31	4.4	31	89	0	180	34	27	19	18	1.95
24645--24689	22	2.0	22	95	0	81	48	11	26	13	1.75
24784--24949	46	3.6	46	88	0	251	38	9	10	41	1.72
25767--25800	2	17.0	2	100	0	68	50	0	0	50	1.00
35918--36069	62	2.5	62	88	0	223	35	14	9	40	1.78
36095--36141	22	2.2	21	85	7	60	27	14	4	53	1.60
36321--36405	23	3.7	23	82	6	102	37	16	7	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36326--36488	82	2.0	84	82	2	204	34	17	7	40	1.77
36304--36512	104	2.0	106	84	5	273	35	16	8	39	1.79
36114--36639	22	24.4	21	69	15	263	35	17	9	37	1.82
36653--36797	22	6.6	22	76	11	129	32	11	11	45	1.75
36653--36797	44	3.3	44	75	9	143	32	11	11	45	1.75
36862--36950	37	2.4	37	80	10	92	56	10	19	14	1.66
36991--37050	26	2.3	26	82	5	77	55	1	8	35	1.40
37068--37135	31	2.2	32	86	10	104	50	5	13	30	1.65
37401--37442	19	2.2	20	82	4	50	73	0	16	9	1.08
40881--40909	13	2.2	13	100	0	58	93	0	6	0	0.36
47066--47108	1	43.0	1	90	0	68	0	4	0	95	0.27
48765--48792	9	3.1	9	100	0	56	46	10	0	42	1.38
78483--78518	8	4.2	8	89	10	54	75	0	25	0	0.81
84728--84834	54	1.9	56	88	7	164	54	22	5	17	1.64
90582--90906	163	2.0	163	90	3	519	43	16	6	34	1.73
93166--93204	18	2.1	19	85	4	53	15	10	15	58	1.62
95504--95546	21	2.1	20	91	4	68	20	27	9	41	1.83
97949--98505	22	25.6	22	68	12	183	35	15	9	39	1.80
98080--98165	45	1.9	45	83	4	111	39	16	9	34	1.80
98611--98982	22	16.6	22	67	13	116	34	15	10	39	1.81
98630--98757	66	1.9	66	80	3	150	34	12	10	42	1.78
99026--99223	22	8.9	22	76	8	152	37	16	9	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99018--99223	44	4.6	44	78	10	177	37	17	9	34	1.82
99018--99223	66	3.1	66	79	6	193	37	17	9	34	1.82
99388--99431	19	2.2	20	84	15	56	61	2	2	34	1.21
99518--99614	38	2.6	37	84	9	133	58	10	17	13	1.62
99737--99802	31	2.1	31	83	5	80	48	4	16	30	1.66
99829--99870	21	2.0	20	86	13	59	42	0	4	52	1.22
101151--101224	35	2.1	35	89	0	112	50	25	9	14	1.73
102575--102613	18	2.1	19	85	4	53	35	15	15	33	1.89
105512--105540	5	6.0	5	92	8	51	58	0	0	41	0.98
105503--105538	12	3.2	12	84	15	58	58	0	0	41	0.98
106500--106718	110	2.0	112	92	1	370	41	8	22	27	1.82
108266--108317	15	3.5	14	76	10	50	36	1	0	61	1.07
112128--112196	29	2.3	30	82	7	86	50	10	27	11	1.70
112492--112525	12	2.8	12	91	8	52	35	47	0	17	1.48
113918--113962	23	2.0	23	90	0	72	33	15	33	17	1.92
116790--116824	14	2.4	14	95	4	61	54	31	14	0	1.40
121785--121809	10	2.5	10	100	0	50	8	8	0	84	0.79
128586--128611	11	2.4	11	100	0	52	50	23	0	26	1.50
145810--145839	15	2.0	15	100	0	60	53	6	33	6	1.53

Tables:   1

The End!