Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014430.1 Corchorus capsularis cultivar CVL-1 contig14451, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8372
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33


Found at i:4335 original size:38 final size:38

Alignment explanation


    Indices: 4293--4400  Score: 207
    Period size: 38  Copynumber: 2.8  Consensus size: 38

       4283 AATTACATAG

                                                  
       4293 CATAAACTGAATGTTAATCTCATTAGACTCATTATGAT
          1 CATAAACTGAATGTTAATCTCATTAGACTCATTATGAT

                                                  
       4331 CATAAACTGAATGTTAATCTCATTAGACTCATTATGAT
          1 CATAAACTGAATGTTAATCTCATTAGACTCATTATGAT

                                  *         
       4369 CATAAACTGAATGTTAATCTCACTAGACTCAT
          1 CATAAACTGAATGTTAATCTCATTAGACTCAT

       4401 CGTTTTGCAA


Statistics
Matches: 69,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  38   69  1.00

ACGTcount: A:0.37, C:0.18, G:0.10, T:0.35


Consensus pattern (38 bp):   
CATAAACTGAATGTTAATCTCATTAGACTCATTATGAT
Done.