Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014431.1 Corchorus capsularis cultivar CVL-1 contig14452, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46717

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--46
2
22.0
2
100
0
88
0
50
0
50
1.00
9092--9146
24
2.3
24
83
0
65
43
20
29
7
1.78
11294--11353
29
2.1
29
90
0
93
26
28
11
33
1.91
11553--11620
29
2.3
30
87
7
95
35
13
30
20
1.91
12012--12075
20
3.1
21
73
4
69
57
7
6
28
1.51
18627--18666
16
2.7
16
88
11
59
52
0
0
47
1.00
22020--22045
7
3.7
7
100
0
52
30
15
0
53
1.42
23582--23722
31
4.7
31
85
4
182
13
25
28
32
1.94
28140--28204
30
2.2
30
85
0
85
20
23
6
50
1.70
31258--31319
31
2.0
31
93
0
106
30
12
29
27
1.93
34933--35000
21
3.1
21
78
12
73
32
11
33
22
1.90
35778--35827
24
2.2
22
77
16
57
26
8
14
52
1.68
36288--36313
12
2.2
12
100
0
52
15
0
19
65
1.27
45613--45649
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1

The End!