Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014432.1 Corchorus capsularis cultivar CVL-1 contig14453, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73598

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71--124
22
2.5
22
84
0
63
37
11
9
42
1.73
133--174
22
2.0
21
85
4
57
26
4
4
64
1.33
202--287
45
1.9
45
83
4
111
38
15
11
34
1.83
158--636
22
21.9
22
68
13
147
36
15
9
38
1.80
622--685
19
3.3
19
84
2
83
23
21
10
43
1.84
794--960
22
7.6
22
73
6
124
35
11
9
43
1.74
770--962
44
4.4
44
75
13
157
34
11
9
44
1.74
769--935
88
1.9
88
83
4
221
34
12
10
43
1.76
1212--1372
22
7.2
22
82
8
105
37
18
10
32
1.85
1219--1365
44
3.3
43
85
5
143
36
17
11
34
1.86
1212--1372
68
2.4
67
79
7
175
37
18
10
32
1.85
1266--1365
44
2.3
44
96
0
182
34
15
14
37
1.87
1697--1759
31
2.0
32
87
3
92
47
4
19
28
1.69
1788--1843
2
27.0
2
89
7
85
46
0
5
48
1.25
2254--2281
14
2.0
14
100
0
56
28
7
35
28
1.84
7125--7170
24
1.9
24
100
0
92
47
6
10
34
1.64
7199--7250
17
3.1
17
78
8
52
63
9
0
26
1.25
9294--9326
15
2.2
15
100
0
66
48
0
18
33
1.48
13431--13461
2
15.5
2
100
0
62
48
0
0
51
1.00
18108--18142
2
17.5
2
87
0
52
51
5
0
42
1.25
30302--30448
2
73.5
2
100
0
294
50
49
0
0
1.00
30793--30818
2
13.0
2
100
0
52
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31259--31295
17
2.1
18
95
5
67
8
5
5
81
0.99
35781--35815
1
35.0
1
100
0
70
100
0
0
0
0.00
55398--55455
29
2.0
29
86
6
82
37
20
3
37
1.70
64397--64431
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1

The End!