Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014433.1 Corchorus capsularis cultivar CVL-1 contig14454, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 36043
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:11793 original size:7 final size:7

Alignment explanation


    Indices: 11781--11810  Score: 60
    Period size: 7  Copynumber: 4.3  Consensus size: 7

      11771 GGAAAAGGAG

                   
      11781 AGTCCAA
          1 AGTCCAA

                   
      11788 AGTCCAA
          1 AGTCCAA

                   
      11795 AGTCCAA
          1 AGTCCAA

                   
      11802 AGTCCAA
          1 AGTCCAA

              
      11809 AG
          1 AG

      11811 AGATTATAGA


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   23  1.00

ACGTcount: A:0.43, C:0.27, G:0.17, T:0.13


Consensus pattern (7 bp):   
AGTCCAA

Found at i:12007 original size:5 final size:5

Alignment explanation


    Indices: 11999--12031  Score: 50
    Period size: 5  Copynumber: 6.8  Consensus size: 5

      11989 CACGACACAC

                                       *            
      11999 CCAGA CCAGA CCAGA CCAGA CCAAA CCAG- CCAG
          1 CCAGA CCAGA CCAGA CCAGA CCAGA CCAGA CCAG

      12032 CCCCCCACTA


Statistics
Matches: 26,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
   4    4  0.15
   5   22  0.85

ACGTcount: A:0.39, C:0.42, G:0.18, T:0.00


Consensus pattern (5 bp):   
CCAGA

Done.