Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014434.1 Corchorus capsularis cultivar CVL-1 contig14455, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32885

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
544--576
14
2.3
15
94
5
59
0
27
0
72
0.85
2762--2887
63
2.0
62
96
1
234
26
12
22
38
1.90
3653--3689
17
2.2
18
85
9
51
56
27
0
16
1.40
6744--6799
27
2.1
27
83
9
71
41
10
10
37
1.75
9175--9243
31
2.3
29
80
9
84
20
23
23
33
1.97
9177--9238
31
2.0
31
90
0
97
17
22
24
35
1.95
16068--16096
2
14.5
2
100
0
58
48
0
0
51
1.00
21188--21268
2
40.5
2
94
0
144
0
2
49
48
1.14
23507--23538
16
2.0
16
93
0
55
46
12
3
37
1.57
23480--23613
43
3.0
44
75
11
128
35
20
12
31
1.90
23628--23697
29
2.5
29
81
9
83
34
22
10
32
1.88
23868--23940
30
2.3
31
86
6
94
23
26
32
17
1.97
24757--24851
27
3.6
27
80
8
97
36
20
10
32
1.86
24959--25896
329
2.9
327
82
4
1093
36
13
14
35
1.85
29539--29618
24
3.2
24
89
7
106
48
2
13
35
1.56
29652--29677
12
2.2
12
100
0
52
46
0
15
38
1.46
29968--32885
330
8.8
331
86
4
3453
33
14
16
35
1.89
30045--32885
982
2.9
980
85
5
3590
33
14
16
35
1.89
32589--32613
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!