Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014435.1 Corchorus capsularis cultivar CVL-1 contig14456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25549

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4--2073
331
6.3
330
82
6
2223
34
15
14
35
1.88
4153--5302
329
3.5
329
84
3
1427
34
14
14
36
1.86
5190--5398
108
2.0
106
81
7
248
37
11
12
37
1.81
4869--5736
434
2.0
434
82
4
1041
34
14
14
36
1.86
5306--8753
322
10.5
329
78
6
2856
33
14
14
37
1.87
8528--8557
2
15.0
2
100
0
60
50
0
0
50
1.00
9419--9645
113
2.0
113
92
0
373
28
25
26
20
1.99
10328--10554
113
2.0
113
92
0
373
27
24
26
21
1.99
9913--11042
566
2.0
564
95
0
2035
30
20
21
27
1.98
11138--11354
109
2.0
111
90
3
348
30
24
25
19
1.98
12126--12153
12
2.3
12
100
0
56
50
32
17
0
1.47
12170--12723
113
5.0
112
78
8
551
32
21
23
22
1.98
12187--12596
215
1.9
216
94
0
732
32
21
23
22
1.98
12834--12860
8
3.4
8
100
0
54
33
0
25
40
1.56
12981--13054
33
2.2
33
92
0
121
12
28
2
56
1.49

Tables:   1

The End!