Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014436.1 Corchorus capsularis cultivar CVL-1 contig14457, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 23343
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32


Found at i:5453 original size:2 final size:2

Alignment explanation


    Indices: 5446--5476  Score: 62
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       5436 TTTGGATTCA

                                                          
       5446 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       5477 GGCAGTTTAT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   29  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:12253 original size:7 final size:7

Alignment explanation


    Indices: 12241--12266  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

      12231 TTGAATGTGA

                   
      12241 ATGTTTC
          1 ATGTTTC

                   
      12248 ATGTTTC
          1 ATGTTTC

                   
      12255 ATGTTTC
          1 ATGTTTC

                 
      12262 ATGTT
          1 ATGTT

      12267 CTACCCTTCC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.15, C:0.12, G:0.15, T:0.58


Consensus pattern (7 bp):   
ATGTTTC

Found at i:23252 original size:2 final size:2

Alignment explanation


    Indices: 23245--23269  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

      23235 GCCATGCCTT

                                                 
      23245 TC TC TC TC TC TC TC TC TC TC TC TC T
          1 TC TC TC TC TC TC TC TC TC TC TC TC T

      23270 TCTGTTAACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52


Consensus pattern (2 bp):   
TC

Done.