Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014437.1 Corchorus capsularis cultivar CVL-1 contig14458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  199098

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3930--3965
2
18.0
2
100
0
72
50
0
0
50
1.00
5559--5588
2
15.0
2
100
0
60
50
0
0
50
1.00
5884--6001
2
64.0
2
66
21
53
48
0
2
49
1.15
5901--5977
11
7.6
11
69
19
51
49
0
3
46
1.20
5893--6008
39
2.9
40
81
8
146
50
0
2
46
1.15
5902--6008
48
2.4
45
83
12
130
49
0
2
47
1.16
6714--6745
13
2.4
14
94
5
57
84
0
15
0
0.63
7023--7055
6
5.5
6
96
0
57
0
36
0
63
0.95
7438--7466
15
2.0
15
93
6
51
51
0
0
48
1.00
10088--10119
2
16.0
2
100
0
64
50
0
0
50
1.00
31545--31581
1
37.0
1
94
0
65
0
0
2
97
0.18
31542--31602
6
10.8
6
92
3
58
0
0
14
85
0.60
31574--31612
3
13.0
3
88
0
60
2
0
30
66
1.05
31542--31605
9
7.6
9
89
5
55
0
0
15
84
0.63
42931--42956
2
13.0
2
100
0
52
50
0
0
50
1.00
46458--46504
23
2.0
23
84
8
60
44
2
10
42
1.51
56609--56640
7
4.6
7
100
0
64
87
12
0
0
0.54
69337--69380
23
1.9
23
90
0
70
29
11
2
56
1.46
69337--69386
23
2.2
23
85
0
64
28
12
2
58
1.45
83796--84122
174
1.9
173
89
1
512
25
15
16
43
1.86
87417--87450
17
1.9
17
88
5
50
2
17
32
47
1.63
87417--87450
6
5.8
6
86
6
52
2
17
32
47
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87655--87686
13
2.5
13
94
0
55
59
3
6
31
1.38
87807--87845
18
2.2
18
90
9
62
15
28
20
35
1.93
88399--88432
16
2.1
16
100
0
68
50
26
0
23
1.50
90596--90648
27
2.0
27
96
0
97
35
26
28
9
1.87
97989--98014
1
26.0
1
100
0
52
100
0
0
0
0.00
99067--99137
27
2.6
27
100
0
142
8
39
21
30
1.83
106289--107081
188
4.0
197
83
7
878
33
12
18
35
1.89
107419--107449
16
1.9
16
93
0
53
54
0
9
35
1.33
108074--108121
23
2.2
22
88
7
71
58
4
25
12
1.52
108331--108473
72
2.0
72
92
0
241
28
23
10
37
1.88
110848--111055
114
1.8
114
92
0
353
25
17
16
39
1.90
113605--113648
23
2.0
23
86
4
63
9
20
6
63
1.46
117005--117045
2
20.5
2
90
9
66
48
2
0
48
1.14
122102--122143
21
2.0
21
90
0
66
14
42
28
14
1.84
122127--122208
33
2.5
33
88
7
123
9
40
36
13
1.78
122952--122983
9
3.7
9
95
4
57
90
0
9
0
0.45
123770--123816
24
2.0
24
95
0
85
8
27
8
55
1.59
159185--159226
21
2.0
21
85
0
57
30
38
7
23
1.82
160937--161014
29
2.6
29
81
6
84
23
21
14
41
1.89
164407--164440
10
3.4
10
91
0
59
44
17
5
32
1.73
164407--164445
20
2.0
20
94
0
69
43
17
7
30
1.77
165267--165291
10
2.5
10
100
0
50
92
0
0
8
0.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
165452--165494
12
3.5
12
90
6
68
27
23
13
34
1.93
175486--175536
23
2.2
24
82
10
70
21
7
15
54
1.66
184754--184783
3
10.3
3
92
7
53
70
0
30
0
0.88
193052--193096
23
2.0
23
95
0
81
42
20
15
22
1.89

Tables:   1

The End!