Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014439.1 Corchorus capsularis cultivar CVL-1 contig14460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  139135

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1595--1723
62
2.1
62
88
2
188
33
11
9
45
1.72
1918--1974
23
2.5
22
80
11
62
38
15
12
33
1.85
1940--2218
22
12.8
23
69
14
123
35
16
9
38
1.81
1938--2023
45
1.9
45
86
9
122
36
16
11
36
1.85
2050--2090
21
2.0
21
85
0
55
29
19
7
43
1.78
2334--2454
22
5.5
22
79
2
100
32
14
10
42
1.79
2310--2454
44
3.3
44
73
9
134
31
13
11
44
1.78
2731--2795
30
2.1
30
82
2
76
46
6
16
30
1.72
14810--14869
30
2.0
30
96
0
111
43
28
13
15
1.84
15143--15169
12
2.2
12
100
0
54
44
0
29
25
1.54
17460--17609
81
1.9
81
91
0
246
40
12
10
37
1.77
23125--23154
10
3.0
10
95
0
51
10
26
0
63
1.26
32179--32206
2
14.0
2
100
0
56
50
0
0
50
1.00
41848--41884
2
18.5
2
100
0
74
48
0
0
51
1.00
42137--42222
42
2.0
42
100
0
172
26
23
16
33
1.95
42954--43001
24
2.0
24
87
0
69
33
27
6
33
1.82
63364--63407
19
2.2
20
88
4
63
18
15
20
45
1.85
63955--64429
39
12.3
39
89
4
624
10
35
9
44
1.71
75636--75668
1
33.0
1
100
0
66
100
0
0
0
0.00
79796--79840
17
2.6
17
89
10
65
22
0
0
77
0.76
92175--92227
26
2.0
26
96
0
97
22
16
15
45
1.85
99383--99407
4
6.2
4
100
0
50
76
0
24
0
0.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
119092--119172
41
2.0
41
82
4
101
32
20
9
37
1.86
134449--134496
3
16.0
3
100
0
96
33
0
0
66
0.92
138546--138580
15
2.2
16
90
5
54
60
0
34
5
1.21
138589--138622
17
1.9
17
88
5
50
79
2
14
2
0.97

Tables:   1

The End!