Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014440.1 Corchorus capsularis cultivar CVL-1 contig14461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43608

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4871--4919
6
8.3
6
88
4
73
85
0
14
0
0.59
19147--19194
9
5.1
10
74
20
50
2
16
0
81
0.79
19149--19194
19
2.4
18
89
7
65
2
15
0
82
0.76
19149--19196
23
2.1
22
88
11
71
2
14
0
83
0.74
19147--19194
5
10.2
5
80
14
50
2
16
0
81
0.79
19292--19358
21
3.3
21
69
23
70
46
7
7
38
1.60
19278--19359
40
2.0
40
100
0
164
43
7
9
39
1.65
19287--19350
19
3.3
19
68
23
60
43
9
7
39
1.66
20344--20378
18
1.9
18
94
0
61
40
8
14
37
1.76
20367--20446
23
3.5
23
84
1
99
41
12
5
41
1.65
20320--20611
22
13.6
22
70
15
150
37
14
8
39
1.76
20085--20611
22
24.5
22
68
14
138
36
14
9
39
1.78
20581--20653
22
3.6
20
78
10
69
27
15
9
47
1.76
20733--20965
44
5.3
44
73
12
185
34
14
9
41
1.78
20734--20948
22
9.7
22
73
11
138
35
13
10
41
1.78
21098--21238
22
6.3
21
73
10
93
39
21
8
31
1.83
21403--21440
19
2.0
20
85
15
53
63
5
2
28
1.30
21564--21636
36
2.1
35
92
2
119
57
12
15
15
1.65
21810--21875
31
2.1
31
86
5
89
45
4
21
28
1.71
22181--22266
31
2.7
33
78
8
97
22
23
20
33
1.97
41992--42138
74
2.0
74
100
0
294
29
16
13
40
1.86

Tables:   1

The End!