Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01014441.1 Corchorus capsularis cultivar CVL-1 contig14462, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21827
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31


Found at i:12819 original size:14 final size:14

Alignment explanation


    Indices: 12800--12832  Score: 50
    Period size: 14  Copynumber: 2.4  Consensus size: 14

      12790 TTGGGATTCC

                          
      12800 TTTTTATATT-TTT
          1 TTTTTATATTCTTT

                           
      12813 ATTTTTATATTCTTT
          1 -TTTTTATATTCTTT

                 
      12828 TTTTT
          1 TTTTT

      12833 TCTTAAGTGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  14   15  0.83
  15    3  0.17

ACGTcount: A:0.15, C:0.03, G:0.00, T:0.82


Consensus pattern (14 bp):   
TTTTTATATTCTTT
Done.