Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014445.1 Corchorus capsularis cultivar CVL-1 contig14466, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88099

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24--118
32
3.1
30
73
10
93
11
35
36
15
1.84
179--218
17
2.4
16
84
8
53
55
2
22
20
1.56
5636--5674
12
3.6
11
87
12
55
0
15
0
84
0.62
5638--5675
8
4.9
8
87
6
51
0
15
0
84
0.63
27347--27603
100
2.5
106
83
10
334
38
8
9
43
1.68
28373--28404
2
16.5
2
93
6
57
50
0
0
50
1.00
33246--33293
22
2.3
20
86
10
62
39
25
16
18
1.91
33213--33315
53
1.9
53
88
0
152
35
26
20
17
1.94
64265--64336
29
2.4
29
88
2
108
16
31
18
33
1.93
64505--64611
29
3.6
29
83
8
126
38
16
28
16
1.91
64650--64702
27
1.9
28
88
3
81
49
15
5
30
1.67
72234--72284
21
2.4
21
80
0
57
13
41
1
43
1.55
73518--73546
13
2.2
13
100
0
58
65
6
6
20
1.40
74252--74289
12
3.2
12
92
0
58
18
36
10
34
1.85
74252--74292
15
2.7
15
88
0
64
17
39
9
34
1.82
74624--74661
15
2.5
15
91
0
58
10
47
0
42
1.38
80069--80491
168
2.5
165
85
3
553
39
16
14
29
1.88
80366--80784
143
2.9
145
92
3
702
38
14
17
29
1.89
82107--82221
42
2.8
41
77
6
126
41
27
11
19
1.85
83569--83598
13
2.3
13
94
0
51
33
6
43
16
1.74

Tables:   1

The End!