Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014446.1 Corchorus capsularis cultivar CVL-1 contig14467, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46990

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
834--878
21
2.1
21
95
0
81
40
11
17
31
1.85
6136--6246
58
1.9
59
90
1
179
34
17
13
35
1.89
8907--8938
1
32.0
1
100
0
64
100
0
0
0
0.00
17661--17724
21
3.2
21
62
20
55
14
42
12
31
1.82
17648--17760
39
2.9
39
97
2
210
13
38
11
37
1.81
35936--36057
60
2.0
60
98
0
235
45
22
9
21
1.81
36252--36339
27
3.3
27
73
6
88
0
37
12
50
1.41
36235--36436
51
4.0
50
84
8
257
0
37
11
50
1.43
36306--36488
24
7.4
25
67
17
87
0
38
9
50
1.40
36229--36436
48
4.1
49
82
11
233
0
37
11
50
1.42
36354--36718
24
14.5
26
77
10
160
1
40
6
51
1.36
36229--36491
99
2.6
99
84
7
307
0
38
10
51
1.39
36310--36487
51
3.6
49
79
16
172
0
38
10
50
1.40
36449--36594
30
5.4
30
71
20
117
0
46
5
47
1.30
36482--36736
24
10.5
24
83
1
267
1
41
5
50
1.36
36418--36566
81
1.8
81
84
8
205
0
44
6
48
1.34
36482--36736
72
3.5
72
84
1
294
1
41
5
50
1.36
36556--36761
72
2.9
72
83
4
193
2
40
5
51
1.40
46963--46989
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!