Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01014447.1 Corchorus capsularis cultivar CVL-1 contig14468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75409

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6421--6544
42
3.0
42
100
0
248
45
14
11
29
1.80
8407--9677
405
3.0
434
79
10
1196
29
18
18
33
1.95
15243--15303
32
1.9
31
87
9
88
45
19
4
29
1.71
18641--18665
13
1.9
13
100
0
50
4
16
8
72
1.24
20876--20907
15
2.1
15
100
0
64
40
6
12
40
1.68
23143--23307
31
5.3
31
87
1
197
17
23
27
32
1.97
34459--34488
2
15.0
2
100
0
60
50
0
0
50
1.00
35923--36962
519
2.0
519
100
0
2080
27
14
16
40
1.88
41788--41873
33
2.5
34
96
3
156
52
12
10
24
1.71
42270--42306
14
2.6
14
95
0
65
62
21
16
0
1.33
42980--43030
16
3.2
16
72
10
50
43
19
9
27
1.82
46841--46869
2
15.0
2
92
7
51
48
0
0
51
1.00
46841--46879
8
4.8
9
87
12
50
46
0
0
53
1.00
46841--46879
12
3.2
13
89
10
57
46
0
0
53
1.00
49748--49811
27
2.3
27
94
2
110
9
26
9
54
1.62
51232--51266
16
2.1
17
89
5
54
31
5
8
54
1.54
62759--65064
329
7.0
331
81
6
2316
34
13
15
35
1.87
62896--65039
660
3.3
651
82
6
2360
34
13
15
36
1.88
65139--65593
230
2.0
230
85
4
623
36
11
15
36
1.84

Tables:   1

The End!